Variant report

Variant	rs563252582
Chromosome Location	chr2:182410124-182410125
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr2:182409705..182411918-chr2:182416700..182419785,3	MCF-7	breast:
2	chr2:182314915..182317774-chr2:182409539..182411527,2	MCF-7	breast:
3	chr2:182404574..182407560-chr2:182408390..182411205,2	MCF-7	breast:

Extended variants
information (count: 5 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1005870	chr2:181968637-182921439	Enhancers Strong transcription Weak transcription Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	39 gene(s)	inside rSNPs	diseases
2	nsv536063	chr2:181968637-182921439	Enhancers Active TSS Weak transcription Strong transcription Bivalent/Poised TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	39 gene(s)	inside rSNPs	diseases
3	nsv1014910	chr2:182375267-182544114	Active TSS Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription Bivalent/Poised TSS Strong transcription Bivalent Enhancer Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
4	nsv536065	chr2:182375267-182544114	Enhancers Active TSS Bivalent Enhancer Weak transcription Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
5	nsv869674	chr2:182409485-182468632	Weak transcription Enhancers Active TSS Bivalent Enhancer Flanking Active TSS	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:182324400-182410400	Weak transcription	NHLF	lung
2	chr2:182389200-182410200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
3	chr2:182389200-182410200	Weak transcription	HMEC	breast
4	chr2:182392600-182410200	Weak transcription	Muscle Satellite Cultured Cells	--
5	chr2:182396200-182410400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
6	chr2:182400600-182411000	Weak transcription	NH-A	brain
7	chr2:182401400-182417600	Weak transcription	NHDF-Ad	bronchial
8	chr2:182402800-182414600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
9	chr2:182405600-182413800	Weak transcription	Primary B cells from peripheral blood	blood
10	chr2:182405600-182414600	Weak transcription	Primary T helper cells PMA-I stimulated	--
11	chr2:182405600-182415200	Weak transcription	Dnd41	blood
12	chr2:182406000-182415400	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
13	chr2:182406200-182411000	Weak transcription	HSMMtube	muscle
14	chr2:182406200-182414600	Weak transcription	Thymus	Thymus
15	chr2:182406200-182414600	Weak transcription	GM12878-XiMat	blood
16	chr2:182406400-182415000	Weak transcription	Primary T cells from cord blood	blood
17	chr2:182406800-182415400	Weak transcription	Primary B cells from cord blood	blood
18	chr2:182406800-182418200	Weak transcription	Fetal Thymus	thymus
19	chr2:182410000-182410800	Enhancers	Pancreatic Islets	Pancreatic Islet
20	chr2:182410000-182411200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
21	chr2:182410000-182411600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin

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