Variant report

Variant	rs563253898
Chromosome Location	chr6:24720137-24720138
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:27)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:27 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr6:24711892..24724164-chr6:24769415..24786834,81	K562	blood:
2	chr6:24719858..24721554-chr6:25106494..25110308,3	MCF-7	breast:
3	chr6:24719506..24722494-chr6:24741132..24743826,4	K562	blood:
4	chr6:24719119..24721965-chr6:26020764..26023234,2	MCF-7	breast:
5	chr6:24715365..24725462-chr6:24770390..24783002,86	K562	blood:
6	chr6:24719711..24722073-chr6:24797818..24801450,3	K562	blood:
7	chr6:24716219..24722234-chr6:24748111..24753033,8	K562	blood:
8	chr6:24718870..24722603-chr6:26025035..26028594,6	K562	blood:
9	chr6:24696748..24707740-chr6:24716503..24724189,24	MCF-7	breast:
10	chr6:24644992..24647314-chr6:24719656..24721157,2	MCF-7	breast:
11	chr6:24494955..24497307-chr6:24719219..24721474,2	MCF-7	breast:
12	chr6:24493014..24496474-chr6:24718971..24722650,4	K562	blood:
13	chr6:24718549..24722818-chr6:24771512..24777723,8	MCF-7	breast:
14	chr6:24661385..24670379-chr6:24713871..24722680,32	K562	blood:
15	chr6:24719968..24721731-chr6:26234799..26237042,2	K562	blood:
16	chr6:24717870..24723661-chr6:24773711..24778808,16	MCF-7	breast:
17	chr6:24660920..24672880-chr6:24713381..24723000,42	K562	blood:
18	chr19:41222659..41224181-chr6:24717413..24720247,2	MCF-7	breast:
19	chr12:93835218..93835818-chr6:24720128..24720890,2	NB4	blood:
20	chr6:24719766..24721631-chr8:99304778..99307612,2	MCF-7	breast:
21	chr6:24665745..24668755-chr6:24718443..24722281,4	MCF-7	breast:
22	chr6:20401095..20405762-chr6:24718847..24722714,7	K562	blood:
23	chr6:20400126..20404982-chr6:24718144..24722714,11	K562	blood:
24	chr6:24666041..24667769-chr6:24719597..24721263,2	MCF-7	breast:
25	chr6:24719372..24721476-chr6:26021686..26024000,3	K562	blood:
26	chr6:24719452..24722494-chr6:24742032..24745228,7	K562	blood:
27	chr6:24492199..24495699-chr6:24718792..24721987,5	K562	blood:

No data

Variant related genes	Relation type
ENSG00000272345	Chromatin interaction
ENSG00000123815	Chromatin interaction
ENSG00000196176	Chromatin interaction
ENSG00000112242	Chromatin interaction
ENSG00000086544	Chromatin interaction
ENSG00000124575	Chromatin interaction
ENSG00000124529	Chromatin interaction
ENSG00000104361	Chromatin interaction
ENSG00000260286	Chromatin interaction
ENSG00000111802	Chromatin interaction
ENSG00000168405	Chromatin interaction
ENSG00000112304	Chromatin interaction
ENSG00000218806	Chromatin interaction
ENSG00000137261	Chromatin interaction
ENSG00000272402	Chromatin interaction
ENSG00000112312	Chromatin interaction
ENSG00000112293	Chromatin interaction
ENSG00000224164	Chromatin interaction
ENSG00000177889	Chromatin interaction
ENSG00000112294	Chromatin interaction

Extended variants
information (count: 7 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3508002	chr6:24618580-24732946	Enhancers Strong transcription Genic enhancers Transcr. at gene 5' and 3' Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	82 gene(s)	inside rSNPs	diseases
2	esv3508003	chr6:24618580-24732946	Weak transcription Genic enhancers Strong transcription Enhancers Active TSS Transcr. at gene 5' and 3' Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	82 gene(s)	inside rSNPs	diseases
3	nsv830609	chr6:24712086-24896647	Weak transcription Enhancers Strong transcription Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	68 gene(s)	inside rSNPs	diseases
4	nsv428474	chr6:24714157-24797977	Weak transcription Flanking Active TSS Active TSS Genic enhancers Strong transcription Enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	65 gene(s)	inside rSNPs	diseases
5	esv3423914	chr6:24719198-24721746	Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Weak transcription Enhancers	TF binding region CpG island Chromatin interactive region	63 gene(s)	inside rSNPs	diseases
6	esv3527679	chr6:24719323-24721621	Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Active TSS Weak transcription Enhancers	TF binding region CpG island Chromatin interactive region	62 gene(s)	inside rSNPs	diseases
7	esv3527680	chr6:24719323-24721621	Weak transcription Active TSS Flanking Active TSS Enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	62 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:127 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:24716400-24720400	Active TSS	Right Atrium	heart
2	chr6:24716400-24722400	Active TSS	Ovary	ovary
3	chr6:24716600-24720800	Active TSS	Aorta	Aorta
4	chr6:24716600-24722000	Active TSS	Stomach Mucosa	stomach
5	chr6:24716600-24722400	Active TSS	Right Ventricle	heart
6	chr6:24716800-24720600	Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
7	chr6:24716800-24722400	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
8	chr6:24716800-24722600	Active TSS	iPS-15b Cell Line	embryonic stem cell
9	chr6:24717000-24721800	Active TSS	NH-A	brain
10	chr6:24717000-24722200	Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
11	chr6:24717000-24722400	Active TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
12	chr6:24717000-24722400	Active TSS	Foreskin Melanocyte Primary Cells skin01	Skin
13	chr6:24717000-24722400	Active TSS	Brain Angular Gyrus	brain
14	chr6:24717000-24722600	Active TSS	Pancreatic Islets	Pancreatic Islet
15	chr6:24717400-24722200	Active TSS	Fetal Intestine Large	intestine
16	chr6:24717600-24722000	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
17	chr6:24717600-24722200	Active TSS	Breast Myoepithelial Primary Cells	Breast
18	chr6:24717600-24722200	Active TSS	HSMMtube	muscle
19	chr6:24717800-24720400	Active TSS	Brain Germinal Matrix	brain
20	chr6:24717800-24722000	Active TSS	Fetal Intestine Small	intestine
21	chr6:24717800-24722000	Active TSS	Rectal Mucosa Donor 29	rectum
22	chr6:24717800-24722000	Active TSS	NHLF	lung
23	chr6:24717800-24722200	Active TSS	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
24	chr6:24717800-24722400	Active TSS	H1 Cell Line	embryonic stem cell
25	chr6:24717800-24722400	Active TSS	Psoas Muscle	Psoas
26	chr6:24717800-24722400	Active TSS	Thymus	Thymus
27	chr6:24718000-24720200	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
28	chr6:24718000-24722000	Active TSS	Fetal Adrenal Gland	Adrenal Gland
29	chr6:24718000-24722200	Active TSS	Duodenum Smooth Muscle	Duodenum
30	chr6:24718000-24722400	Active TSS	ES-WA7 Cell Line	embryonic stem cell
31	chr6:24718000-24722400	Active TSS	IMR90 fetal lung fibroblasts Cell Line	lung
32	chr6:24718000-24722600	Active TSS	Stomach Smooth Muscle	stomach
33	chr6:24718200-24722000	Active TSS	Placenta	Placenta
34	chr6:24718200-24722200	Active TSS	A549	lung
35	chr6:24718200-24722400	Active TSS	Brain Anterior Caudate	brain
36	chr6:24718400-24721800	Active TSS	Hela-S3	cervix
37	chr6:24718400-24722000	Active TSS	Small Intestine	intestine
38	chr6:24718400-24722200	Active TSS	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
39	chr6:24718400-24722200	Active TSS	Left Ventricle	heart
40	chr6:24718400-24722200	Active TSS	Lung	lung
41	chr6:24718400-24722200	Active TSS	Placenta Amnion	Placenta Amnion
42	chr6:24718400-24722400	Active TSS	H9 Cell Line	embryonic stem cell
43	chr6:24718600-24722000	Active TSS	Fetal Muscle Trunk	muscle
44	chr6:24718600-24722000	Active TSS	Sigmoid Colon	Sigmoid Colon
45	chr6:24718600-24722000	Active TSS	HSMM	muscle
46	chr6:24718600-24722200	Active TSS	Brain Substantia Nigra	brain
47	chr6:24718800-24722000	Active TSS	Pancreas	Pancrea
48	chr6:24718800-24722200	Active TSS	Colonic Mucosa	Colon
49	chr6:24718800-24722600	Active TSS	NHDF-Ad	bronchial
50	chr6:24719000-24720200	Flanking Active TSS	Primary B cells from cord blood	blood

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