Variant report

Variant	rs56326725
Chromosome Location	chr11:67201615-67201616
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:67172860..67176369-chr11:67201428..67204494,3	K562	blood:
2	chr11:67201248..67204152-chr11:67232413..67236121,3	K562	blood:
3	chr11:67187544..67192614-chr11:67201349..67205044,6	K562	blood:
4	chr11:67158620..67160811-chr11:67201509..67205285,3	K562	blood:
5	chr11:67200052..67201775-chr11:67236334..67238070,2	K562	blood:
6	chr11:67201204..67205243-chr11:67272634..67278205,5	MCF-7	breast:
7	chr11:67201373..67203481-chr11:67248801..67250929,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000110697	Chromatin interaction
ENSG00000172531	Chromatin interaction
ENSG00000172613	Chromatin interaction
ENSG00000172508	Chromatin interaction
ENSG00000110711	Chromatin interaction
ENSG00000172663	Chromatin interaction
ENSG00000167797	Chromatin interaction
ENSG00000175463	Chromatin interaction

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs17501521	0.81[ASN][1000 genomes]
rs61740832	1.00[EUR][1000 genomes]
rs67501657	0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:23 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv531397	chr11:66653381-67465721	Active TSS Enhancers Strong transcription Flanking Active TSS Weak transcription Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	271 gene(s)	inside rSNPs	diseases
2	nsv897797	chr11:67023040-67293234	Flanking Active TSS Strong transcription Enhancers Active TSS Weak transcription Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	206 gene(s)	inside rSNPs	diseases
3	nsv1043037	chr11:67027193-67357425	Enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Flanking Active TSS Strong transcription Genic enhancers Active TSS ZNF genes & repeats Weak transcription Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	213 gene(s)	inside rSNPs	diseases
4	nsv897801	chr11:67033076-67432479	Bivalent Enhancer Enhancers Weak transcription Strong transcription Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	236 gene(s)	inside rSNPs	diseases
5	nsv1048230	chr11:67058231-67252397	Active TSS Enhancers Weak transcription Flanking Active TSS Genic enhancers Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	146 gene(s)	inside rSNPs	diseases
6	nsv897804	chr11:67090571-67224278	Flanking Active TSS Enhancers Weak transcription Strong transcription Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	103 gene(s)	inside rSNPs	diseases
7	nsv1039205	chr11:67135246-67252397	Enhancers Strong transcription Active TSS Flanking Active TSS Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Weak transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	122 gene(s)	inside rSNPs	diseases
8	esv1818769	chr11:67138811-67300457	Flanking Active TSS Active TSS Genic enhancers Weak transcription Enhancers Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	167 gene(s)	inside rSNPs	diseases
9	esv1798859	chr11:67139954-67272983	Active TSS Weak transcription Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	154 gene(s)	inside rSNPs	diseases
10	nsv897805	chr11:67155210-67283891	ZNF genes & repeats Flanking Active TSS Genic enhancers Enhancers Weak transcription Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	148 gene(s)	inside rSNPs	diseases
11	nsv897806	chr11:67155210-67294308	Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription Genic enhancers Weak transcription Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	148 gene(s)	inside rSNPs	diseases
12	nsv897807	chr11:67155210-67414492	Active TSS Bivalent/Poised TSS Strong transcription Genic enhancers Flanking Active TSS Enhancers Weak transcription Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	176 gene(s)	inside rSNPs	diseases
13	nsv897808	chr11:67155210-67419855	Flanking Active TSS Strong transcription Enhancers Weak transcription Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	176 gene(s)	inside rSNPs	diseases
14	nsv897809	chr11:67156875-67276235	Active TSS Flanking Active TSS Enhancers Transcr. at gene 5' and 3' Strong transcription Weak transcription Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	148 gene(s)	inside rSNPs	diseases
15	nsv555254	chr11:67164495-67288594	Weak transcription Flanking Active TSS Active TSS Genic enhancers Enhancers Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	146 gene(s)	inside rSNPs	diseases
16	nsv534229	chr11:67164667-67411909	Flanking Active TSS Enhancers Weak transcription Transcr. at gene 5' and 3' Bivalent Enhancer Active TSS Strong transcription Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	175 gene(s)	inside rSNPs	diseases
17	nsv897811	chr11:67166984-67218909	Enhancers Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription Strong transcription Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	70 gene(s)	inside rSNPs	diseases
18	nsv897813	chr11:67175692-67283891	Bivalent Enhancer Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Enhancers Genic enhancers Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	132 gene(s)	inside rSNPs	diseases
19	nsv521723	chr11:67175692-67311258	Bivalent/Poised TSS Flanking Active TSS Active TSS Enhancers Weak transcription Bivalent Enhancer ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	132 gene(s)	inside rSNPs	diseases
20	esv1847460	chr11:67182600-67219337	Weak transcription Enhancers Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers Strong transcription Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	51 gene(s)	inside rSNPs	diseases
21	nsv524096	chr11:67186000-67224988	Enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Active TSS Active TSS Weak transcription Strong transcription Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	52 gene(s)	inside rSNPs	diseases
22	nsv468604	chr11:67186000-67283891	Active TSS Strong transcription Bivalent/Poised TSS Weak transcription Genic enhancers Flanking Active TSS Enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	132 gene(s)	inside rSNPs	diseases
23	nsv555256	chr11:67186000-67283891	Enhancers Active TSS Flanking Active TSS Weak transcription Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	132 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:124 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:67196800-67210200	Weak transcription	Fetal Kidney	kidney
2	chr11:67197000-67202400	Genic enhancers	Fetal Thymus	thymus
3	chr11:67197000-67202800	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
4	chr11:67197200-67201800	Weak transcription	Psoas Muscle	Psoas
5	chr11:67197200-67202000	Genic enhancers	Dnd41	blood
6	chr11:67197200-67202800	Strong transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
7	chr11:67197200-67203000	Weak transcription	HSMM	muscle
8	chr11:67197200-67203400	Strong transcription	Primary monocytes fromperipheralblood	blood
9	chr11:67197200-67203400	Strong transcription	Sigmoid Colon	Sigmoid Colon
10	chr11:67197200-67203600	Strong transcription	Fetal Stomach	stomach
11	chr11:67197200-67203600	Weak transcription	Small Intestine	intestine
12	chr11:67197200-67203800	Strong transcription	Primary neutrophils fromperipheralblood	blood
13	chr11:67197200-67203800	Weak transcription	NH-A	brain
14	chr11:67197200-67206200	Strong transcription	Brain Cingulate Gyrus	brain
15	chr11:67197200-67206800	Weak transcription	Hela-S3	cervix
16	chr11:67197200-67206800	Weak transcription	NHDF-Ad	bronchial
17	chr11:67197200-67207000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
18	chr11:67197200-67207000	Weak transcription	Right Atrium	heart
19	chr11:67197200-67209400	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
20	chr11:67197200-67209800	Weak transcription	Fetal Heart	heart
21	chr11:67197200-67210000	Strong transcription	Fetal Brain Female	brain
22	chr11:67197200-67210000	Weak transcription	Pancreatic Islets	Pancreatic Islet
23	chr11:67197400-67202200	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
24	chr11:67197400-67206800	Strong transcription	Brain Hippocampus Middle	brain
25	chr11:67197400-67209400	Strong transcription	Fetal Intestine Large	intestine
26	chr11:67197600-67202000	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
27	chr11:67197600-67202200	Strong transcription	Fetal Muscle Leg	muscle
28	chr11:67197600-67203400	Strong transcription	H9 Cell Line	embryonic stem cell
29	chr11:67197600-67203600	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
30	chr11:67197600-67203600	Strong transcription	Rectal Mucosa Donor 31	rectum
31	chr11:67197600-67204400	Strong transcription	Brain Dorsolateral Prefrontal Cortex	brain
32	chr11:67197600-67204800	Strong transcription	Fetal Intestine Small	intestine
33	chr11:67197600-67204800	Strong transcription	Right Ventricle	heart
34	chr11:67197600-67208200	Strong transcription	Brain Germinal Matrix	brain
35	chr11:67197600-67209400	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
36	chr11:67197800-67203200	Strong transcription	HUES48 Cell Line	embryonic stem cell
37	chr11:67197800-67203200	Strong transcription	Ovary	ovary
38	chr11:67198000-67201800	Strong transcription	Stomach Smooth Muscle	stomach
39	chr11:67198000-67203000	Strong transcription	HUES6 Cell Line	embryonic stem cell
40	chr11:67198000-67203200	Strong transcription	NHEK	skin
41	chr11:67198000-67205400	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
42	chr11:67198200-67202000	Strong transcription	Duodenum Mucosa	Duodenum
43	chr11:67198200-67202400	Strong transcription	iPS-20b Cell Line	embryonic stem cell
44	chr11:67198200-67203200	Strong transcription	Adipose Nuclei	Adipose
45	chr11:67198200-67203600	Strong transcription	Brain Substantia Nigra	brain
46	chr11:67198200-67203600	Strong transcription	Duodenum Smooth Muscle	Duodenum
47	chr11:67198200-67203600	Strong transcription	Left Ventricle	heart
48	chr11:67198200-67204000	Strong transcription	Monocytes-CD14+_RO01746	blood
49	chr11:67198200-67204400	Strong transcription	Brain Angular Gyrus	brain
50	chr11:67198200-67206800	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin

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