Variant report

Variant	rs56328362
Chromosome Location	chr5:98399281-98399282
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs41300817	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs41300819	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs55677526	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs55693839	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs55704716	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs55845744	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs55905355	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs55914571	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs55932002	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56017435	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56053751	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56100354	1.00[AMR][1000 genomes]
rs56174213	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56197564	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56262721	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56365720	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56381912	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1024391	chr5:98355665-98653657	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
2	nsv599118	chr5:98358191-99029453	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
3	nsv599119	chr5:98358191-99315677	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:98398000-98400000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
2	chr5:98398600-98399600	Weak transcription	NHDF-Ad	bronchial
3	chr5:98399000-98403400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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