Variant report

Variant	rs563305490
Chromosome Location	chr10:25337695-25337696
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 2 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv550224	chr10:25335854-25385858	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	6 gene(s)	inside rSNPs	diseases
2	nsv1036683	chr10:25337592-25398119	Enhancers Weak transcription Bivalent Enhancer Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:25335600-25338000	Enhancers	Cortex derived primary cultured neurospheres	brain
2	chr10:25336000-25337800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
3	chr10:25336000-25337800	Enhancers	HMEC	breast
4	chr10:25336000-25338000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
5	chr10:25336000-25338000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
6	chr10:25336200-25337800	Enhancers	NHEK	skin
7	chr10:25336200-25338200	Enhancers	Fetal Intestine Small	intestine
8	chr10:25336400-25338200	Enhancers	Brain Anterior Caudate	brain
9	chr10:25336600-25338000	Enhancers	HSMMtube	muscle
10	chr10:25337000-25338000	Enhancers	Brain Substantia Nigra	brain
11	chr10:25337000-25338200	Enhancers	Fetal Intestine Large	intestine
12	chr10:25337200-25337800	Enhancers	Ovary	ovary
13	chr10:25337200-25338200	Enhancers	Duodenum Mucosa	Duodenum
14	chr10:25337400-25338200	Enhancers	K562	blood
15	chr10:25337400-25348200	Weak transcription	Placenta Amnion	Placenta Amnion
16	chr10:25337600-25337800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
17	chr10:25337600-25337800	Enhancers	Rectal Mucosa Donor 31	rectum
18	chr10:25337600-25337800	Bivalent Enhancer	Osteobl	bone
19	chr10:25337600-25348200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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