Variant report

Variant	rs56331236
Chromosome Location	chr15:49316202-49316203
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	MAZ	chr15:49316189-49316246	GM12878	blood:	n/a	n/a

Variant related genes	Relation type
SECISBP2L	TF binding region

rs_ID	r²[population]
rs16962191	1.00[EUR][1000 genomes]
rs55875053	1.00[EUR][1000 genomes]

Chromatin state (count:123 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:49282800-49333400	Weak transcription	A549	lung
2	chr15:49283600-49337600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
3	chr15:49285000-49329000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
4	chr15:49289200-49336400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
5	chr15:49289800-49317000	Weak transcription	Stomach Mucosa	stomach
6	chr15:49298000-49328400	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
7	chr15:49298000-49328800	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
8	chr15:49298200-49316400	Strong transcription	Placenta	Placenta
9	chr15:49298200-49329800	Strong transcription	Primary T helper cells fromperipheralblood	blood
10	chr15:49298400-49322000	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
11	chr15:49298400-49322000	Strong transcription	Primary B cells from peripheral blood	blood
12	chr15:49298600-49325200	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
13	chr15:49298600-49329600	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
14	chr15:49301400-49329000	Weak transcription	K562	blood
15	chr15:49303000-49327600	Weak transcription	Right Ventricle	heart
16	chr15:49304200-49318800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
17	chr15:49304400-49318000	Weak transcription	Brain Germinal Matrix	brain
18	chr15:49308400-49318200	Weak transcription	Fetal Brain Female	brain
19	chr15:49308400-49320000	Weak transcription	HepG2	liver
20	chr15:49308400-49320200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
21	chr15:49308400-49327000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
22	chr15:49308400-49327600	Weak transcription	Dnd41	blood
23	chr15:49308600-49318000	Weak transcription	Brain Angular Gyrus	brain
24	chr15:49308600-49319000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
25	chr15:49308600-49320000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
26	chr15:49308600-49320600	Weak transcription	Fetal Heart	heart
27	chr15:49308600-49323000	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
28	chr15:49308600-49326800	Weak transcription	Esophagus	oesophagus
29	chr15:49308600-49327000	Weak transcription	Gastric	stomach
30	chr15:49308800-49320000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
31	chr15:49308800-49326800	Weak transcription	Fetal Thymus	thymus
32	chr15:49308800-49328200	Weak transcription	Small Intestine	intestine
33	chr15:49308800-49331800	Weak transcription	H9 Cell Line	embryonic stem cell
34	chr15:49308800-49334400	Weak transcription	Psoas Muscle	Psoas
35	chr15:49309200-49327600	Weak transcription	NHEK	skin
36	chr15:49309400-49317000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
37	chr15:49309400-49318000	Weak transcription	Primary hematopoietic stem cells	blood
38	chr15:49309400-49318200	Weak transcription	Fetal Brain Male	brain
39	chr15:49309400-49320000	Weak transcription	Colonic Mucosa	Colon
40	chr15:49309600-49318000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
41	chr15:49309600-49318000	Weak transcription	Rectal Mucosa Donor 31	rectum
42	chr15:49309600-49319000	Weak transcription	H1 Cell Line	embryonic stem cell
43	chr15:49309600-49320200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
44	chr15:49309600-49321600	Weak transcription	HMEC	breast
45	chr15:49309800-49317600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
46	chr15:49309800-49319000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
47	chr15:49309800-49319800	Weak transcription	HUVEC	blood vessel
48	chr15:49310000-49317600	Weak transcription	NH-A	brain
49	chr15:49310000-49318000	Weak transcription	Muscle Satellite Cultured Cells	--
50	chr15:49310000-49319000	Weak transcription	NHLF	lung

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