Variant report
| Variant | rs563312516 |
|---|---|
| Chromosome Location | chr2:212640729-212640730 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:14)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
(count:14 , 50 per page) page:
1
| No. | Transcrition factor | Chromosome Location | Cell Line | Cell type | Cell Stage | Matched TF binding sites |
|---|---|---|---|---|---|---|
| 1 | POU2F2 | chr2:212640675-212640939 | GM12878 | blood: | n/a | n/a |
| 2 | PAX5 | chr2:212640713-212640958 | GM12878 | blood: | n/a | n/a |
| 3 | RXRA | chr2:212640547-212640948 | GM12878 | blood: | n/a | n/a |
| 4 | BHLHE40 | chr2:212640609-212641064 | HepG2 | liver: | n/a | n/a |
| 5 | EP300 | chr2:212640701-212640928 | GM12878 | blood: | n/a | n/a |
| 6 | FOSL2 | chr2:212640721-212640950 | HepG2 | liver: | n/a | n/a |
| 7 | HEY1 | chr2:212640707-212640892 | HepG2 | liver: | n/a | n/a |
| 8 | PAX5 | chr2:212640726-212640924 | GM12878 | blood: | n/a | n/a |
| 9 | ZBTB33 | chr2:212640729-212640930 | HepG2 | liver: | n/a | n/a |
| 10 | FOSL2 | chr2:212640686-212640926 | HepG2 | liver: | n/a | n/a |
| 11 | SIX5 | chr2:212640720-212640918 | K562 | blood: | n/a | n/a |
| 12 | SP1 | chr2:212640712-212640930 | GM12878 | blood: | n/a | n/a |
| 13 | HEY1 | chr2:212640715-212640922 | K562 | blood: | n/a | n/a |
| 14 | TAF1 | chr2:212640669-212640912 | Hela-S3 | cervix: | n/a | n/a |
| No data |
| No data |
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| ENSG00000236007 | TF binding region |
| MTND2P23 | TF binding region |
Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | esv34128 | chr2:212581485-212857122 | Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer | TF binding regionCpG islandChromatin interactive region | 3 gene(s) | inside rSNPs | diseases |
| 2 | nsv963773 | chr2:212638550-212645592 | Enhancers Weak transcription | TF binding region | 2 gene(s) | inside rSNPs | diseases |
| 3 | nsv875784 | chr2:212639948-212761152 | Enhancers Active TSS Weak transcription Flanking Active TSS | TF binding regionCpG islandChromatin interactive region | 2 gene(s) | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
