Variant report

Variant	rs563325399
Chromosome Location	chr3:23527475-23527476
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:23526588..23528958-chr3:23530661..23532883,2	K562	blood:

Extended variants
information (count: 4 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1002823	chr3:23277838-23623083	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv1007373	chr3:23367952-23710331	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Genic enhancers Strong transcription Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
3	nsv533980	chr3:23445901-24311972	ZNF genes & repeats Strong transcription Weak transcription Flanking Active TSS Enhancers Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	64 gene(s)	inside rSNPs	diseases
4	esv3434857	chr3:23527314-23531055	Enhancers Weak transcription ZNF genes & repeats Genic enhancers Strong transcription Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:41 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:23521000-23527600	Weak transcription	Right Ventricle	heart
2	chr3:23521000-23531800	Weak transcription	NHDF-Ad	bronchial
3	chr3:23521200-23527600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
4	chr3:23521600-23532000	Weak transcription	Stomach Smooth Muscle	stomach
5	chr3:23521800-23527600	Weak transcription	Spleen	Spleen
6	chr3:23521800-23528600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
7	chr3:23522000-23527800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
8	chr3:23522000-23531000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
9	chr3:23522000-23531200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
10	chr3:23522200-23527600	Weak transcription	Fetal Thymus	thymus
11	chr3:23522200-23527800	Weak transcription	Fetal Muscle Trunk	muscle
12	chr3:23522200-23528000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
13	chr3:23523000-23530800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
14	chr3:23523200-23536800	Weak transcription	Duodenum Smooth Muscle	Duodenum
15	chr3:23523400-23527600	Weak transcription	Aorta	Aorta
16	chr3:23523400-23531000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
17	chr3:23523600-23527600	Weak transcription	H1 Cell Line	embryonic stem cell
18	chr3:23523600-23528000	Weak transcription	Brain Anterior Caudate	brain
19	chr3:23523600-23542400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
20	chr3:23524000-23534800	Weak transcription	Brain Hippocampus Middle	brain
21	chr3:23524800-23527600	Weak transcription	Skeletal Muscle Female	skeletal muscle
22	chr3:23524800-23531000	Weak transcription	Psoas Muscle	Psoas
23	chr3:23526000-23528200	Weak transcription	Fetal Heart	heart
24	chr3:23526000-23532000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
25	chr3:23526600-23554000	Weak transcription	Primary T cells from cord blood	blood
26	chr3:23527200-23528000	ZNF genes & repeats	HUES6 Cell Line	embryonic stem cell
27	chr3:23527200-23528600	ZNF genes & repeats	Primary B cells from peripheral blood	blood
28	chr3:23527400-23527600	Enhancers	Skeletal Muscle Male	skeletal muscle
29	chr3:23527400-23527800	ZNF genes & repeats	Foreskin Melanocyte Primary Cells skin03	Skin
30	chr3:23527400-23528000	ZNF genes & repeats	Foreskin Fibroblast Primary Cells skin01	Skin
31	chr3:23527400-23528000	ZNF genes & repeats	Adipose Nuclei	Adipose
32	chr3:23527400-23528600	ZNF genes & repeats	Primary B cells from cord blood	blood
33	chr3:23527400-23528600	ZNF genes & repeats	Monocytes-CD14+_RO01746	blood
34	chr3:23527400-23528800	ZNF genes & repeats	IMR90 fetal lung fibroblasts Cell Line	lung
35	chr3:23527400-23528800	ZNF genes & repeats	iPS DF 19.11 Cell Line	embryonic stem cell
36	chr3:23527400-23528800	Enhancers	Left Ventricle	heart
37	chr3:23527400-23528800	ZNF genes & repeats	Lung	lung
38	chr3:23527400-23528800	ZNF genes & repeats	Right Atrium	heart
39	chr3:23527400-23528800	ZNF genes & repeats	Thymus	Thymus
40	chr3:23527400-23529000	ZNF genes & repeats	ES-UCSF4 Cell Line	embryonic stem cell
41	chr3:23527400-23529000	ZNF genes & repeats	Fetal Stomach	stomach

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links