Variant report

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	REST	chr1:95581938-95583315	H1-neurons	neurons:	n/a	chr1:95583217-95583230 chr1:95582375-95582395 chr1:95583161-95583174 chr1:95582615-95582635 chr1:95582615-95582635
2	CTCF	chr1:95581805-95583042	A549	lung:	n/a	n/a
3	E2F4	chr1:95581135-95583029	MCF10A-Er-Src	breast:	n/a	chr1:95582289-95582298 chr1:95582642-95582651
4	ARID3A	chr1:95581929-95582635	HepG2	liver:	n/a	n/a
5	ZNF274	chr1:95581089-95581964	K562	blood:	n/a	n/a
6	POLR2A	chr1:95581058-95585752	PBDE	blood:	n/a	n/a
7	GATA1	chr1:95580973-95585387	PBDE	blood:	n/a	chr1:95581629-95581640 chr1:95583211-95583219 chr1:95582032-95582048 chr1:95584335-95584344 chr1:95584460-95584467

No.	Distal block	Cell Line	Cell type
1	chr1:95581571..95584597-chr1:95698513..95700535,3	MCF-7	breast:
2	chr1:94946963..94948709-chr1:95581027..95583387,2	K562	blood:
3	chr1:95537109..95538703-chr1:95581704..95583330,2	MCF-7	breast:
4	chr1:95581745..95584156-chr1:95699309..95702187,2	MCF-7	breast:
5	chr1:95580754..95585035-chr1:95586074..95591340,6	K562	blood:
6	chr1:95579611..95582560-chr1:95641374..95643709,2	K562	blood:
7	chr1:95537896..95540428-chr1:95580653..95582591,2	MCF-7	breast:

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830636	chr1:95495849-95703126	Strong transcription Enhancers Weak transcription Bivalent/Poised TSS Active TSS Flanking Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
2	esv3354291	chr1:95580964-95585362	Active TSS Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Weak transcription Enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	11 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:95581000-95582200	Enhancers	Primary neutrophils fromperipheralblood	blood
2	chr1:95581000-95582400	Flanking Active TSS	K562	blood
3	chr1:95581200-95582000	Enhancers	Fetal Heart	heart
4	chr1:95581200-95582000	Enhancers	Hela-S3	cervix
5	chr1:95581200-95582200	Enhancers	Brain Anterior Caudate	brain
6	chr1:95581200-95582200	Enhancers	Fetal Intestine Large	intestine
7	chr1:95581200-95582200	Enhancers	Fetal Intestine Small	intestine
8	chr1:95581600-95582000	Enhancers	Brain Cingulate Gyrus	brain
9	chr1:95581600-95582000	Weak transcription	HMEC	breast
10	chr1:95581600-95582200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
11	chr1:95581600-95582200	Enhancers	Placenta	Placenta
12	chr1:95581600-95582400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
13	chr1:95581600-95582400	Bivalent Enhancer	Primary hematopoietic stem cells	blood
14	chr1:95581600-95582400	Weak transcription	Esophagus	oesophagus
15	chr1:95581600-95582400	Flanking Active TSS	HepG2	liver
16	chr1:95581600-95582800	Flanking Active TSS	Liver	Liver
17	chr1:95581800-95582000	Enhancers	iPS-15b Cell Line	embryonic stem cell
18	chr1:95581800-95582000	Enhancers	iPS-18 Cell Line	embryonic stem cell
19	chr1:95581800-95582200	Enhancers	ES-I3 Cell Line	embryonic stem cell
20	chr1:95581800-95582200	Flanking Active TSS	A549	lung

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