Variant report

Variant	rs563338999
Chromosome Location	chr13:80456555-80456556
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 5 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1044254	chr13:80419496-80457686	Enhancers Flanking Active TSS Weak transcription Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	n/a
2	esv3519064	chr13:80454760-80460250	Weak transcription Enhancers Flanking Active TSS	n/a	n/a	inside rSNPs	n/a
3	esv3519075	chr13:80454760-80460250	Enhancers Weak transcription Flanking Active TSS	n/a	n/a	inside rSNPs	n/a
4	esv17425	chr13:80454929-80460045	Enhancers Weak transcription Flanking Active TSS	n/a	n/a	inside rSNPs	n/a
5	nsv562416	chr13:80456018-80459531	Enhancers Weak transcription	n/a	n/a	inside rSNPs	n/a

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:80449000-80472400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr13:80449400-80458800	Weak transcription	Thymus	Thymus
3	chr13:80452800-80457800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
4	chr13:80452800-80459000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
5	chr13:80455400-80461400	Enhancers	Primary neutrophils fromperipheralblood	blood
6	chr13:80456200-80458800	Weak transcription	Primary monocytes fromperipheralblood	blood
7	chr13:80456200-80459200	Weak transcription	Monocytes-CD14+_RO01746	blood
8	chr13:80456200-80461400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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