Variant report
| Variant | rs563342575 |
|---|---|
| Chromosome Location | chr1:58343995-58343996 |
| allele | G/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:10)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
(count:10 , 50 per page) page:
1
| No. | lncRNA name | Chromosome Location | lncRNA alias |
|---|---|---|---|
| 1 | lnc-C8A-5 | chr1:58343974-58344115 | ENSG00000230363 |
| 2 | lnc-C8A-4 | chr1:58343969-58344115 | ENSG00000226759.3 |
| 3 | lnc-C8A-4 | chr1:58343969-58344137 | ENSG00000226759.3 |
| 4 | lnc-C8A-4 | chr1:58343969-58344115 | ENSG00000226759.3 |
| 5 | lnc-C8A-4 | chr1:58343969-58344139 | ENSG00000226759.3 |
| 6 | lnc-C8A-4 | chr1:58343969-58344016 | ENSG00000226759.3 |
| 7 | lnc-C8A-4 | chr1:58343969-58344115 | ENSG00000226759.3 |
| 8 | lnc-C8A-4 | chr1:58343969-58344115 | ENSG00000226759.3 |
| 9 | lnc-C8A-4 | chr1:58343969-58344044 | ENSG00000226759.3 |
| 10 | lnc-C8A-4 | chr1:58343969-58344445 | ENSG00000226759.3 |
| No data |
| No data |
| No data |
Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1015057 | chr1:57976993-58793962 | Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 11 gene(s) | inside rSNPs | diseases |
| 2 | nsv530017 | chr1:58002290-58669736 | Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 9 gene(s) | inside rSNPs | diseases |
| 3 | nsv431379 | chr1:58224212-58802608 | Weak transcription Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Active TSS Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 9 gene(s) | inside rSNPs | diseases |
| 4 | nsv829937 | chr1:58258288-58406506 | Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Active TSS Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNA | 2 gene(s) | inside rSNPs | diseases |
| 5 | esv2641726 | chr1:58342621-58344021 | Enhancers Weak transcription | lncRNA | n/a | inside rSNPs | n/a |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
