Variant report

Variant	rs563357990
Chromosome Location	chr5:95301560-95301561
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Variant related genes	Relation type
ELL2	TF binding region
ENSG00000213716	Chromatin interaction
ENSG00000153113	Chromatin interaction
ENSG00000118985	Chromatin interaction
ENSG00000251314	Chromatin interaction

Extended variants
information (count: 3 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2758003	chr5:95231706-95540433	Flanking Active TSS Weak transcription Enhancers Strong transcription Active TSS Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	20 gene(s)	inside rSNPs	diseases
2	esv2759355	chr5:95231706-95540433	Weak transcription Flanking Active TSS Enhancers Bivalent/Poised TSS Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	20 gene(s)	inside rSNPs	diseases
3	nsv823146	chr5:95300912-95453557	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:95298400-95301600	Weak transcription	Fetal Intestine Small	intestine
2	chr5:95298400-95309200	Weak transcription	NHLF	lung
3	chr5:95298600-95302000	Weak transcription	Fetal Intestine Large	intestine
4	chr5:95298600-95305000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
5	chr5:95298600-95305200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
6	chr5:95298800-95302000	Weak transcription	Gastric	stomach
7	chr5:95298800-95322600	Weak transcription	Pancreas	Pancrea
8	chr5:95299600-95309000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
9	chr5:95300000-95308600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
10	chr5:95300200-95303000	Enhancers	HepG2	liver
11	chr5:95300600-95302600	Enhancers	Liver	Liver
12	chr5:95301000-95302200	Enhancers	Pancreatic Islets	Pancreatic Islet
13	chr5:95301400-95302400	Enhancers	A549	lung
14	chr5:95301400-95302800	Enhancers	Stomach Mucosa	stomach

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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