Variant report

Variant	rs563359504
Chromosome Location	chr16:52304586-52304587
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 4 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv492248	chr16:51681902-52456082	Enhancers Weak transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	40 gene(s)	inside rSNPs	diseases
2	esv34024	chr16:51878565-52316530	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	33 gene(s)	inside rSNPs	diseases
3	nsv1066719	chr16:52294981-53141905	Flanking Active TSS Weak transcription Enhancers Genic enhancers Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	33 gene(s)	inside rSNPs	diseases
4	nsv827651	chr16:52304029-52373509	Enhancers Weak transcription ZNF genes & repeats Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Active TSS	Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:52300800-52305000	Weak transcription	Brain Germinal Matrix	brain
2	chr16:52301600-52304800	Weak transcription	Cortex derived primary cultured neurospheres	brain
3	chr16:52301800-52304600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
4	chr16:52301800-52305200	Weak transcription	Fetal Kidney	kidney
5	chr16:52302200-52304800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
6	chr16:52304400-52305200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
7	chr16:52304400-52305400	Enhancers	Fetal Brain Female	brain
8	chr16:52304400-52305800	Enhancers	Fetal Brain Male	brain
9	chr16:52304400-52306000	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
10	chr16:52304400-52306800	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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