Variant report

Variant	rs56336142
Chromosome Location	chr6:39134099-39134100
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:18)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

No data

(count:18 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:39133996..39134734-chr6:39272385..39273221,2	MCF-7	breast:
2	chr6:39133919..39134901-chr6:39269183..39270000,2	MCF-7	breast:
3	chr6:38965007..38965584-chr6:39133874..39134390,2	K562	blood:
4	chr6:39133945..39136207-chr6:39268865..39270685,2	K562	blood:
5	chr6:39133861..39134928-chr6:39277334..39278545,23	K562	blood:
6	chr6:39131553..39138589-chr6:39265255..39275264,18	MCF-7	breast:
7	chr6:39133845..39134835-chr6:39277381..39278344,16	MCF-7	breast:
8	chr6:39133802..39135109-chr6:39270035..39271889,35	MCF-7	breast:
9	chr6:39133923..39134830-chr6:39272711..39273440,3	MCF-7	breast:
10	chr6:39133596..39135022-chr6:39270483..39271780,16	MCF-7	breast:
11	chr6:38940690..38941643-chr6:39133929..39134512,2	MCF-7	breast:
12	chr6:39133917..39134430-chr6:39279752..39280431,2	K562	blood:
13	chr6:39062197..39062843-chr6:39133865..39134736,2	K562	blood:
14	chr6:39133868..39135046-chr6:39274906..39276247,3	K562	blood:
15	chr6:39133828..39135626-chr6:39269069..39271952,36	K562	blood:
16	chr6:39133950..39135504-chr6:39277417..39278328,8	MCF-7	breast:
17	chr6:39134049..39137396-chr6:39195548..39198485,4	MCF-7	breast:
18	chr6:39131623..39134675-chr6:39276152..39278287,3	MCF-7	breast:

No data

No data

No data

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs12214118	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1544935	0.94[AMR][1000 genomes];0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2894421	0.97[AMR][1000 genomes];0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs62398607	0.94[AMR][1000 genomes];0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs755852	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1028088	chr6:38821047-39163549	Weak transcription Active TSS Enhancers Flanking Active TSS Strong transcription Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
2	nsv538205	chr6:38821047-39163549	Flanking Active TSS Weak transcription Enhancers Active TSS Strong transcription Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
3	nsv830644	chr6:39116530-39325980	Weak transcription Flanking Active TSS Enhancers Bivalent/Poised TSS Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
4	nsv1022974	chr6:39120271-39277553	Flanking Active TSS Enhancers Weak transcription Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region miRNA target site	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:39127600-39134400	Weak transcription	Sigmoid Colon	Sigmoid Colon
2	chr6:39128800-39136200	Weak transcription	Pancreas	Pancrea
3	chr6:39132200-39134400	Weak transcription	Right Atrium	heart
4	chr6:39132200-39137000	Weak transcription	Gastric	stomach
5	chr6:39134000-39134400	Bivalent Enhancer	Primary T cells fromperipheralblood	blood
6	chr6:39134000-39134600	Enhancers	Primary T helper memory cells from peripheral blood 2	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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