Variant report

rSNPs within LD-proxies of this variant (count:41)

rs_ID	r²[population]
rs11995012	0.80[ASN][1000 genomes]
rs13261342	0.94[ASN][1000 genomes]
rs13268843	0.94[ASN][1000 genomes]
rs13270488	0.94[ASN][1000 genomes]
rs13276825	0.96[ASN][1000 genomes]
rs13282134	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs13282865	0.94[ASN][1000 genomes]
rs4347021	0.85[ASN][1000 genomes]
rs4552930	0.85[ASN][1000 genomes]
rs4552931	0.85[ASN][1000 genomes]
rs55634172	0.86[ASN][1000 genomes]
rs55653841	0.87[ASN][1000 genomes]
rs55697403	0.86[ASN][1000 genomes]
rs55723686	0.83[ASN][1000 genomes]
rs55738586	0.85[ASN][1000 genomes]
rs55777725	0.80[ASN][1000 genomes]
rs55816658	0.85[ASN][1000 genomes]
rs55828804	0.85[ASN][1000 genomes]
rs55878633	0.85[ASN][1000 genomes]
rs55996401	0.87[ASN][1000 genomes]
rs56005426	0.87[ASN][1000 genomes]
rs56005944	0.85[ASN][1000 genomes]
rs56099275	0.80[ASN][1000 genomes]
rs56129629	0.87[ASN][1000 genomes]
rs56252522	0.87[ASN][1000 genomes]
rs56316010	0.82[ASN][1000 genomes]
rs6981583	0.87[ASN][1000 genomes]
rs6997499	0.87[ASN][1000 genomes]
rs6998518	0.85[ASN][1000 genomes]
rs7011118	0.87[ASN][1000 genomes]
rs7016696	0.87[ASN][1000 genomes]
rs7017974	0.87[ASN][1000 genomes]
rs7816954	0.85[ASN][1000 genomes]
rs7829495	0.87[ASN][1000 genomes]
rs7829616	0.87[ASN][1000 genomes]
rs7829764	0.87[ASN][1000 genomes]
rs7830222	0.87[ASN][1000 genomes]
rs7832085	0.85[ASN][1000 genomes]
rs7836185	0.85[ASN][1000 genomes]
rs7836200	0.83[ASN][1000 genomes]
rs7845258	0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831310	chr8:49080177-49256440	Enhancers Active TSS Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv831311	chr8:49106160-49290209	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Active TSS ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv1018242	chr8:49190915-49243694	Weak transcription Flanking Active TSS Enhancers Bivalent Enhancer Active TSS Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	nsv539600	chr8:49190915-49243694	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:49197000-49207200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr8:49197000-49212200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr8:49199800-49203600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
4	chr8:49200600-49202800	Enhancers	Lung	lung
5	chr8:49200800-49213800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
6	chr8:49201000-49203400	Weak transcription	NHDF-Ad	bronchial
7	chr8:49201800-49204200	Enhancers	Fetal Lung	lung
8	chr8:49202000-49203400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
9	chr8:49202200-49204200	Weak transcription	NHLF	lung

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