Variant report

Variant	rs56336376
Chromosome Location	chr1:67229505-67229506
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 37 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs10493416	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10493417	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10493418	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10493419	1.00[ASN][1000 genomes]
rs10493420	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1060575	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11208952	0.97[ASN][1000 genomes]
rs11208953	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11208954	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12063724	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12070460	0.87[ASN][1000 genomes]
rs12727390	1.00[ASN][1000 genomes]
rs12727422	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12733829	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17441669	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17442177	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17442361	0.93[ASN][1000 genomes]
rs1812444	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1909184	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2270702	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34089513	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs36100970	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3816989	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6695554	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6696874	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6697073	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6699313	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs68045184	1.00[ASN][1000 genomes]
rs68063507	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7515248	1.00[ASN][1000 genomes]
rs7519784	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7525761	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7535868	0.84[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7545934	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869413	chr1:67082512-67414286	Weak transcription Strong transcription Enhancers Active TSS Genic enhancers Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
2	nsv830093	chr1:67173594-67348264	Weak transcription Enhancers Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Strong transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	esv1009176	chr1:67227876-67231940	Weak transcription ZNF genes & repeats Enhancers Active TSS Strong transcription Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:67221600-67236400	Weak transcription	Liver	Liver
2	chr1:67222800-67236200	Weak transcription	Psoas Muscle	Psoas
3	chr1:67226200-67231400	Weak transcription	K562	blood
4	chr1:67227400-67236400	Weak transcription	Primary neutrophils fromperipheralblood	blood
5	chr1:67227800-67229800	ZNF genes & repeats	Primary hematopoietic stem cells	blood
6	chr1:67227800-67230000	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
7	chr1:67228000-67229800	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Female	--
8	chr1:67228600-67230800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
9	chr1:67229400-67236400	Weak transcription	Primary hematopoietic stem cells short term culture	blood

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