Variant report
| Variant | rs56338219 |
|---|---|
| Chromosome Location | chr2:58478988-58478989 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:9)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:1)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
(count:9 , 50 per page) page:
1
| No. | Transcrition factor | Chromosome Location | Cell Line | Cell type | Cell Stage | Matched TF binding sites |
|---|---|---|---|---|---|---|
| 1 | POLR2A | chr2:58478569-58479002 | Hela-S3 | cervix: | n/a | n/a |
| 2 | ZBTB33 | chr2:58478526-58479270 | K562 | blood: | n/a | n/a |
| 3 | HEY1 | chr2:58478571-58478992 | K562 | blood: | n/a | n/a |
| 4 | POLR2A | chr2:58478763-58479049 | H1-hESC | embryonic stem cell: | n/a | n/a |
| 5 | POLR2A | chr2:58478650-58479179 | A549 | lung: | n/a | n/a |
| 6 | POLR2A | chr2:58478926-58479017 | GM12878 | blood: | n/a | n/a |
| 7 | POLR2A | chr2:58478784-58479181 | MCF-7 | breast: | n/a | n/a |
| 8 | POLR2A | chr2:58478900-58479018 | ProgFib | skin: | n/a | n/a |
| 9 | POLR2A | chr2:58478506-58479271 | H1-hESC | embryonic stem cell: | n/a | n/a |
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | lncRNA name | Chromosome Location | lncRNA alias |
|---|---|---|---|
| 1 | lnc-FANCL-4 | chr2:58478585-58479810 | NONHSAT070851 |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| EIF3FP3 | TF binding region |
Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv999042 | chr2:58326123-58530903 | Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNA | 14 gene(s) | inside rSNPs | diseases |
| 2 | nsv535734 | chr2:58326123-58530903 | ZNF genes & repeats Weak transcription Active TSS Strong transcription Flanking Active TSS Enhancers Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 14 gene(s) | inside rSNPs | diseases |
| 3 | nsv979006 | chr2:58477513-58480966 | Inactive region | TF binding regionCpG islandChromatin interactive regionlncRNA | 1 gene(s) | inside rSNPs | n/a |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
