Variant report

Variant	rs563405657
Chromosome Location	chr20:52886580-52886581
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:10)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

No data

(count:10 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr20:52884699..52888516-chr20:52964644..52967204,3	MCF-7	breast:
2	chr20:52823148..52829420-chr20:52882441..52888238,13	MCF-7	breast:
3	chr20:52884175..52887299-chr20:52959985..52962637,4	MCF-7	breast:
4	chr20:52885191..52887868-chr20:55839667..55841629,2	MCF-7	breast:
5	chr20:52883714..52887393-chr20:53262850..53265125,5	MCF-7	breast:
6	chr20:52885163..52887679-chr20:53176549..53178400,2	MCF-7	breast:
7	chr20:52835744..52843522-chr20:52881395..52889377,15	MCF-7	breast:
8	chr20:52823141..52827110-chr20:52881540..52888271,10	MCF-7	breast:
9	chr20:52886227..52888754-chr20:52977596..52979522,2	MCF-7	breast:
10	chr20:52884195..52887005-chr20:53073312..53075000,2	MCF-7	breast:

No data

No data

No data

Extended variants
information (count: 6 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv586224	chr20:52474850-53279490	Flanking Active TSS Weak transcription Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Active TSS Bivalent/Poised TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	338 gene(s)	inside rSNPs	diseases
2	nsv834010	chr20:52759824-52932939	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	119 gene(s)	inside rSNPs	diseases
3	nsv834011	chr20:52858341-53086042	Enhancers ZNF genes & repeats Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS	Chromatin interactive region lncRNA	55 gene(s)	inside rSNPs	diseases
4	nsv962638	chr20:52883415-52917517	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS	Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
5	nsv178887	chr20:52885413-52894836	Enhancers Weak transcription	Chromatin interactive region	7 gene(s)	inside rSNPs	diseases
6	esv3416729	chr20:52886548-52886769	Weak transcription Enhancers	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr20:52883400-52886600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
2	chr20:52884000-52889400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
3	chr20:52884600-52889200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
4	chr20:52885000-52889600	Weak transcription	Pancreas	Pancrea
5	chr20:52885200-52889600	Weak transcription	H9 Cell Line	embryonic stem cell
6	chr20:52885200-52889600	Weak transcription	Ovary	ovary
7	chr20:52885600-52889000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
8	chr20:52885800-52889200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
9	chr20:52885800-52889600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
10	chr20:52886000-52889200	Weak transcription	HUES48 Cell Line	embryonic stem cell
11	chr20:52886000-52889200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
12	chr20:52886200-52889200	Weak transcription	HUES64 Cell Line	embryonic stem cell
13	chr20:52886200-52889200	Weak transcription	iPS-20b Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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