Variant report

Variant	rs563410885
Chromosome Location	chr4:7972646-7972647
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr4:7968293..7969808-chr4:7972289..7974865,2	MCF-7	breast:
2	chr4:7966853..7969531-chr4:7971692..7973616,2	MCF-7	breast:
3	chr4:7972595..7975049-chr4:7979721..7982181,5	MCF-7	breast:
4	chr4:7938506..7945813-chr4:7968503..7977501,21	MCF-7	breast:
5	chr4:7972328..7974698-chr4:7988025..7989740,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000228919	Chromatin interaction
ENSG00000196526	Chromatin interaction

Extended variants
information (count: 10 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:10 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv491712	chr4:7582506-8155069	Enhancers Bivalent Enhancer Genic enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
2	esv34140	chr4:7787936-8172491	Enhancers Weak transcription Genic enhancers Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	18 gene(s)	inside rSNPs	diseases
3	esv2754386	chr4:7822449-7992909	Weak transcription Enhancers Active TSS Genic enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
4	esv2756298	chr4:7822449-7992909	Enhancers Bivalent Enhancer Flanking Active TSS Weak transcription Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
5	nsv829851	chr4:7958698-8049060	Active TSS Enhancers Flanking Active TSS Weak transcription Strong transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	9 gene(s)	inside rSNPs	diseases
6	nsv469779	chr4:7965253-8177646	Weak transcription Bivalent Enhancer Strong transcription Bivalent/Poised TSS Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	13 gene(s)	inside rSNPs	diseases
7	nsv482448	chr4:7965253-8177646	Flanking Active TSS Enhancers Weak transcription Bivalent/Poised TSS Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	13 gene(s)	inside rSNPs	diseases
8	nsv878579	chr4:7969594-8011696	Enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region miRNA	7 gene(s)	inside rSNPs	diseases
9	esv18370	chr4:7971253-7974932	Enhancers Flanking Active TSS Bivalent Enhancer Weak transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
10	nsv593622	chr4:7971872-7974747	Flanking Active TSS Weak transcription Active TSS Enhancers Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:107 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:7963400-7975400	Weak transcription	Aorta	Aorta
2	chr4:7967000-7987600	Weak transcription	Psoas Muscle	Psoas
3	chr4:7969000-7975600	Genic enhancers	Skeletal Muscle Male	skeletal muscle
4	chr4:7969200-7973400	Enhancers	Right Ventricle	heart
5	chr4:7969200-7974400	Enhancers	Fetal Muscle Leg	muscle
6	chr4:7969200-7975600	Enhancers	Fetal Thymus	thymus
7	chr4:7969200-7975800	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
8	chr4:7969400-7972800	Enhancers	Right Atrium	heart
9	chr4:7969400-7973200	Enhancers	NHLF	lung
10	chr4:7969400-7974800	Enhancers	Lung	lung
11	chr4:7969400-7975800	Enhancers	Stomach Smooth Muscle	stomach
12	chr4:7969400-7976000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
13	chr4:7969600-7975800	Enhancers	Placenta Amnion	Placenta Amnion
14	chr4:7969800-7973600	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
15	chr4:7970400-7973000	Enhancers	Adipose Nuclei	Adipose
16	chr4:7970400-7973200	Enhancers	Skeletal Muscle Female	skeletal muscle
17	chr4:7970400-7980200	Weak transcription	HSMM	muscle
18	chr4:7970800-7975800	Enhancers	NH-A	brain
19	chr4:7971000-7972800	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
20	chr4:7971000-7973000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
21	chr4:7971000-7973000	Enhancers	Fetal Lung	lung
22	chr4:7971000-7973200	Enhancers	Brain Cingulate Gyrus	brain
23	chr4:7971000-7973400	Enhancers	Fetal Brain Male	brain
24	chr4:7971000-7973400	Enhancers	Fetal Heart	heart
25	chr4:7971000-7974600	Enhancers	HUES6 Cell Line	embryonic stem cell
26	chr4:7971000-7976000	Enhancers	Breast Myoepithelial Primary Cells	Breast
27	chr4:7971000-7976000	Enhancers	HMEC	breast
28	chr4:7971200-7973000	Enhancers	H1 Cell Line	embryonic stem cell
29	chr4:7971200-7973200	Flanking Active TSS	Primary T helper naive cells fromperipheralblood	blood
30	chr4:7971200-7973200	Bivalent Enhancer	Primary hematopoietic stem cells G-CSF-mobilized Female	--
31	chr4:7971200-7973200	Flanking Active TSS	GM12878-XiMat	blood
32	chr4:7971200-7974000	Flanking Active TSS	Primary T helper cells PMA-I stimulated	--
33	chr4:7971200-7976000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
34	chr4:7971400-7972800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
35	chr4:7971400-7973400	Flanking Active TSS	Primary T regulatory cells fromperipheralblood	blood
36	chr4:7971400-7974600	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
37	chr4:7971400-7974600	Flanking Active TSS	Rectal Mucosa Donor 29	rectum
38	chr4:7971400-7974600	Flanking Active TSS	HepG2	liver
39	chr4:7971400-7975000	Enhancers	Pancreas	Pancrea
40	chr4:7971600-7973000	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
41	chr4:7971600-7973000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
42	chr4:7971600-7973000	Flanking Active TSS	Primary T helper naive cells from peripheral blood	blood
43	chr4:7971600-7973000	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
44	chr4:7971600-7973000	Enhancers	Brain Angular Gyrus	brain
45	chr4:7971600-7973000	Enhancers	Brain Inferior Temporal Lobe	brain
46	chr4:7971600-7973200	Flanking Active TSS	A549	lung
47	chr4:7971600-7973600	Flanking Active TSS	Primary T helper cells fromperipheralblood	blood
48	chr4:7971600-7973600	Flanking Active TSS	Primary Natural Killer cells fromperipheralblood	blood
49	chr4:7971600-7973800	Flanking Active TSS	Primary T cells fromperipheralblood	blood
50	chr4:7971600-7973800	Flanking Active TSS	HUVEC	blood vessel

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