Variant report

Variant	rs563415327
Chromosome Location	chr1:220502778-220502779
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1001681	chr1:220425057-220548325	Enhancers Flanking Active TSS Weak transcription Strong transcription Genic enhancers Bivalent Enhancer ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	nsv535298	chr1:220425057-220548325	Weak transcription Strong transcription Genic enhancers Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
3	nsv549223	chr1:220500958-220503401	Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
4	esv3355469	chr1:220501029-220505527	Enhancers Weak transcription Active TSS Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
5	nsv549224	chr1:220501889-220503401	Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
6	nsv549225	chr1:220501889-220504423	Weak transcription Enhancers Flanking Active TSS Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
7	esv3428704	chr1:220502279-220504577	Active TSS Enhancers Weak transcription Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
8	nsv826698	chr1:220502732-220503736	Enhancers Weak transcription Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:220498800-220503000	Weak transcription	Cortex derived primary cultured neurospheres	brain
2	chr1:220499000-220509400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
3	chr1:220500200-220502800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
4	chr1:220500600-220510800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
5	chr1:220500800-220509000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
6	chr1:220501400-220508800	Weak transcription	Esophagus	oesophagus
7	chr1:220501800-220502800	Enhancers	ES-WA7 Cell Line	embryonic stem cell
8	chr1:220502600-220502800	Enhancers	iPS-20b Cell Line	embryonic stem cell
9	chr1:220502600-220502800	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
10	chr1:220502600-220503000	Enhancers	Breast Myoepithelial Primary Cells	Breast
11	chr1:220502600-220503200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
12	chr1:220502600-220504200	Enhancers	Brain Germinal Matrix	brain

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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