Variant report

Variant	rs56341754
Chromosome Location	chr17:33860916-33860917
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr17:33639415..33640336-chr17:33860071..33860985,4	K562	blood:
2	chr17:33639164..33640312-chr17:33859981..33861014,10	MCF-7	breast:
3	chr17:33639516..33640351-chr17:33860065..33861379,3	MCF-7	breast:

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs28671232	0.92[EUR][1000 genomes]
rs56036930	0.87[AMR][1000 genomes]
rs56312421	0.89[AMR][1000 genomes];0.83[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1055936	chr17:33327166-33884184	Strong transcription Weak transcription Flanking Active TSS Bivalent/Poised TSS Enhancers Genic enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	112 gene(s)	inside rSNPs	diseases
2	nsv543317	chr17:33327166-33884184	Active TSS Weak transcription Enhancers Flanking Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	112 gene(s)	inside rSNPs	diseases
3	nsv534371	chr17:33456878-34094068	Strong transcription Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	137 gene(s)	inside rSNPs	diseases
4	nsv519981	chr17:33841737-33864479	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS Strong transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
5	nsv574754	chr17:33841737-33881631	Enhancers Active TSS Weak transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
6	nsv908079	chr17:33849869-34034851	Active TSS Strong transcription Flanking Active TSS Enhancers Weak transcription Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	44 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr17:33851400-33862600	Weak transcription	Spleen	Spleen
2	chr17:33859400-33863600	Flanking Active TSS	Dnd41	blood
3	chr17:33860000-33865800	Flanking Active TSS	Primary T helper cells fromperipheralblood	blood
4	chr17:33860200-33861000	Flanking Active TSS	Primary T helper memory cells from peripheral blood 2	blood
5	chr17:33860200-33861000	Flanking Active TSS	Primary T helper memory cells from peripheral blood 1	blood
6	chr17:33860200-33861000	Flanking Active TSS	Primary T killer memory cells from peripheral blood	blood
7	chr17:33860200-33861800	Flanking Active TSS	Primary T cells fromperipheralblood	blood
8	chr17:33860200-33862000	Flanking Active TSS	Primary T killer naive cells fromperipheralblood	blood
9	chr17:33860200-33862800	Flanking Active TSS	Primary T helper naive cells from peripheral blood	blood
10	chr17:33860200-33863000	Flanking Active TSS	Primary T helper cells PMA-I stimulated	--
11	chr17:33860400-33861200	Flanking Active TSS	Primary T helper naive cells fromperipheralblood	blood
12	chr17:33860400-33865200	Active TSS	Primary T cells effector/memory enriched fromperipheralblood	blood
13	chr17:33860600-33861200	Enhancers	Fetal Thymus	thymus
14	chr17:33860600-33861400	Active TSS	Primary mononuclear cells fromperipheralblood	Blood
15	chr17:33860600-33863200	Flanking Active TSS	Primary Natural Killer cells fromperipheralblood	blood
16	chr17:33860600-33866200	Weak transcription	Monocytes-CD14+_RO01746	blood
17	chr17:33860800-33861000	Active TSS	Primary T regulatory cells fromperipheralblood	blood
18	chr17:33860800-33861200	Active TSS	Primary T cells from cord blood	blood
19	chr17:33860800-33861200	Enhancers	GM12878-XiMat	blood
20	chr17:33860800-33861400	Enhancers	Fetal Lung	lung
21	chr17:33860800-33861800	Active TSS	Primary T helper 17 cells PMA-I stimulated	--
22	chr17:33860800-33863400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
23	chr17:33860800-33864000	Weak transcription	Thymus	Thymus

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