Variant report

Variant	rs563420923
Chromosome Location	chr7:79906678-79906679
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 4 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv429785	chr7:79589749-80177049	Bivalent/Poised TSS Weak transcription Active TSS Enhancers Strong transcription Flanking Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
2	nsv1024312	chr7:79832637-80004812	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
3	nsv1029180	chr7:79832637-80017560	Enhancers Flanking Active TSS Weak transcription Strong transcription Genic enhancers Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
4	esv2761340	chr7:79905897-79922486	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:37 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:79898800-79911000	Weak transcription	Small Intestine	intestine
2	chr7:79901600-79908000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
3	chr7:79903400-79907200	Weak transcription	Brain Cingulate Gyrus	brain
4	chr7:79904200-79907000	Weak transcription	Brain Substantia Nigra	brain
5	chr7:79905600-79911000	Weak transcription	Sigmoid Colon	Sigmoid Colon
6	chr7:79905800-79906800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
7	chr7:79905800-79909000	Weak transcription	Left Ventricle	heart
8	chr7:79905800-79909400	Enhancers	Hela-S3	cervix
9	chr7:79906000-79907000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
10	chr7:79906000-79907200	Weak transcription	Skeletal Muscle Male	skeletal muscle
11	chr7:79906200-79910200	Enhancers	Fetal Adrenal Gland	Adrenal Gland
12	chr7:79906400-79907000	Flanking Active TSS	A549	lung
13	chr7:79906400-79907200	Active TSS	Rectal Mucosa Donor 29	rectum
14	chr7:79906400-79907400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
15	chr7:79906400-79907600	Enhancers	HMEC	breast
16	chr7:79906400-79907800	Enhancers	Fetal Lung	lung
17	chr7:79906400-79908000	Enhancers	Fetal Intestine Large	intestine
18	chr7:79906400-79908000	Enhancers	Rectal Mucosa Donor 31	rectum
19	chr7:79906400-79908400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
20	chr7:79906400-79908400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
21	chr7:79906400-79908400	Enhancers	Fetal Kidney	kidney
22	chr7:79906400-79909000	Enhancers	Colon Smooth Muscle	Colon
23	chr7:79906400-79909400	Enhancers	Fetal Intestine Small	intestine
24	chr7:79906600-79907000	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
25	chr7:79906600-79907000	Enhancers	iPS-18 Cell Line	embryonic stem cell
26	chr7:79906600-79907200	Enhancers	HUES64 Cell Line	embryonic stem cell
27	chr7:79906600-79907200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
28	chr7:79906600-79907200	Weak transcription	Ovary	ovary
29	chr7:79906600-79907400	Enhancers	HUES48 Cell Line	embryonic stem cell
30	chr7:79906600-79907400	Enhancers	Brain Hippocampus Middle	brain
31	chr7:79906600-79907600	Enhancers	ES-I3 Cell Line	embryonic stem cell
32	chr7:79906600-79907800	Enhancers	NHLF	lung
33	chr7:79906600-79908200	Flanking Active TSS	NHEK	skin
34	chr7:79906600-79908400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
35	chr7:79906600-79909200	Enhancers	Adipose Nuclei	Adipose
36	chr7:79906600-79909200	Enhancers	Pancreatic Islets	Pancreatic Islet
37	chr7:79906600-79912800	Weak transcription	Fetal Muscle Leg	muscle

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