Variant report

Variant	rs563425941
Chromosome Location	chr6:53797342-53797343
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 4 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1034955	chr6:53447607-53931055	Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Strong transcription Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	35 gene(s)	inside rSNPs	diseases
2	nsv830664	chr6:53698021-53825270	Enhancers Weak transcription Strong transcription ZNF genes & repeats Genic enhancers Flanking Active TSS Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
3	nsv1067663	chr6:53796341-54449718	Enhancers Active TSS Weak transcription Strong transcription Flanking Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
4	nsv529158	chr6:53796341-54449718	Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:53772000-53803000	Weak transcription	Lung	lung
2	chr6:53787800-53807800	Weak transcription	Aorta	Aorta
3	chr6:53787800-53810800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
4	chr6:53790600-53798000	Weak transcription	Fetal Thymus	thymus
5	chr6:53792800-53797800	Weak transcription	Placenta Amnion	Placenta Amnion
6	chr6:53793000-53799200	Weak transcription	HSMMtube	muscle
7	chr6:53794600-53801000	Weak transcription	Dnd41	blood
8	chr6:53794600-53807800	Weak transcription	Left Ventricle	heart
9	chr6:53794800-53803200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
10	chr6:53794800-53815600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
11	chr6:53795200-53797600	Weak transcription	Small Intestine	intestine
12	chr6:53795200-53799200	Weak transcription	Stomach Smooth Muscle	stomach
13	chr6:53795200-53803800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
14	chr6:53795200-53807400	Weak transcription	Fetal Stomach	stomach
15	chr6:53795400-53799200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
16	chr6:53795600-53826200	Weak transcription	NHEK	skin
17	chr6:53795800-53803000	Weak transcription	Esophagus	oesophagus
18	chr6:53797000-53798200	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
19	chr6:53797200-53797400	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
20	chr6:53797200-53797400	Enhancers	Sigmoid Colon	Sigmoid Colon
21	chr6:53797200-53797600	Enhancers	Duodenum Mucosa	Duodenum
22	chr6:53797200-53797800	Enhancers	Fetal Intestine Small	intestine

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