Variant report

Variant	rs56342850
Chromosome Location	chr10:54094670-54094671
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr10:54092765..54095467-chr10:54095802..54098728,3	MCF-7	breast:
2	chr10:54084953..54086748-chr10:54094455..54096148,2	MCF-7	breast:
3	chr10:54092984..54095026-chr10:54166953..54169179,2	MCF-7	breast:

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs55911116	0.97[AFR][1000 genomes]
rs74133309	0.91[AFR][1000 genomes]
rs74133310	0.91[AFR][1000 genomes]
rs74133311	0.94[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532194	chr10:53746620-54735550	Weak transcription Genic enhancers Flanking Active TSS Enhancers Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	33 gene(s)	inside rSNPs	diseases
2	nsv895399	chr10:53900872-54219820	Enhancers Bivalent/Poised TSS Weak transcription Transcr. at gene 5' and 3' Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:29 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:54078400-54094800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
2	chr10:54086400-54097400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
3	chr10:54091400-54095200	Enhancers	HepG2	liver
4	chr10:54093000-54096000	Enhancers	NHEK	skin
5	chr10:54093200-54096000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
6	chr10:54093200-54096000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
7	chr10:54093200-54096400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
8	chr10:54093400-54095800	Enhancers	A549	lung
9	chr10:54093800-54095800	Enhancers	Hela-S3	cervix
10	chr10:54093800-54096000	Enhancers	HMEC	breast
11	chr10:54094000-54095200	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
12	chr10:54094000-54095400	Enhancers	HUES6 Cell Line	embryonic stem cell
13	chr10:54094000-54096000	Enhancers	Muscle Satellite Cultured Cells	--
14	chr10:54094200-54095200	Enhancers	HUES64 Cell Line	embryonic stem cell
15	chr10:54094200-54095400	Enhancers	NH-A	brain
16	chr10:54094400-54095000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
17	chr10:54094400-54095000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
18	chr10:54094400-54095200	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
19	chr10:54094400-54095200	Enhancers	iPS-20b Cell Line	embryonic stem cell
20	chr10:54094400-54095200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
21	chr10:54094400-54095200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
22	chr10:54094400-54095200	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
23	chr10:54094400-54095200	Enhancers	HSMM	muscle
24	chr10:54094400-54095200	Enhancers	NHLF	lung
25	chr10:54094400-54095400	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
26	chr10:54094400-54095400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
27	chr10:54094400-54095400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
28	chr10:54094400-54095400	Enhancers	Osteobl	bone
29	chr10:54094600-54095000	Enhancers	HUVEC	blood vessel

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