Variant report

Variant	rs563443884
Chromosome Location	chr9:12922918-12922919
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 4 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv498136	chr9:12387840-12984158	Genic enhancers Enhancers Active TSS Flanking Active TSS Weak transcription Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
2	esv2422212	chr9:12448789-13127738	Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
3	nsv613615	chr9:12830070-12947238	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription Genic enhancers	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
4	nsv613616	chr9:12922330-13018096	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Genic enhancers	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:12917000-12933600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
2	chr9:12917200-12930000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
3	chr9:12917200-12934000	Weak transcription	HUES6 Cell Line	embryonic stem cell
4	chr9:12917400-12933600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
5	chr9:12922000-12923000	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
6	chr9:12922000-12925400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
7	chr9:12922200-12924800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
8	chr9:12922200-12924800	Enhancers	Fetal Heart	heart
9	chr9:12922200-12925400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
10	chr9:12922200-12925400	Enhancers	NHDF-Ad	bronchial
11	chr9:12922400-12923400	Weak transcription	Colon Smooth Muscle	Colon
12	chr9:12922400-12924000	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
13	chr9:12922600-12923400	Weak transcription	Fetal Lung	lung
14	chr9:12922600-12924000	Enhancers	Fetal Stomach	stomach
15	chr9:12922600-12924200	Enhancers	Adipose Nuclei	Adipose
16	chr9:12922800-12923800	Weak transcription	Duodenum Smooth Muscle	Duodenum
17	chr9:12922800-12923800	Weak transcription	Rectal Smooth Muscle	rectum
18	chr9:12922800-12931000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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