Variant report

Variant	rs563444519
Chromosome Location	chr17:16594508-16594509
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:61)
Chromatin interactive
region (count:0)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:61 , 50 per page) page: 1 2

No.	Chromosome Location	Cell Line	Cell type	Cell Stage
1	chr17:16594459-16594509	HCT-116	colon:	n/a
2	chr17:16594459-16594509	BJ	skin:	n/a
3	chr17:16594459-16594509	NH-A	brain:	n/a
4	chr17:16594459-16594509	GM12878	blood:	n/a
5	chr17:16594459-16594509	SK-N-SH	brain:	n/a
6	chr17:16594459-16594509	SKMC	muscle:	n/a
7	chr17:16594459-16594509	Hepatocyte	liver:	n/a
8	chr17:16594459-16594509	HRPEpiC	eye:	n/a
9	chr17:16594459-16594509	Hela-S3	cervix:	n/a
10	chr17:16594459-16594509	MCF10A-Er-Src	breast:	n/a
11	chr17:16594459-16594509	PrEC	prostate:	n/a
12	chr17:16594459-16594509	AG04450	lung:	fetal
13	chr17:16594459-16594509	LNCaP	prostate:	n/a
14	chr17:16594459-16594509	U87	brain:	n/a
15	chr17:16594459-16594509	NB4	blood:	n/a
16	chr17:16594459-16594509	GM06990	blood:	n/a
17	chr17:16594459-16594509	HPAEpiC	pulmonary alveolar:	n/a
18	chr17:16594459-16594509	HMEC	breast:	n/a
19	chr17:16594459-16594509	HIPEpiC	eye:	n/a
20	chr17:16594459-16594509	RPTEC	kidney:	n/a
21	chr17:16594459-16594509	HepG2	liver:	n/a
22	chr17:16594459-16594509	ECC-1	luminal epithelium:	n/a
23	chr17:16594459-16594509	HEEpiC	esophagus:	n/a
24	chr17:16594459-16594509	T-47D	breast:	n/a
25	chr17:16594459-16594509	BE2_C	brain:	n/a
26	chr17:16594459-16594509	A549	lung:	n/a
27	chr17:16594459-16594509	NHBE	bronchial:	n/a
28	chr17:16594459-16594509	GM12891	blood:	n/a
29	chr17:16594459-16594509	PANC-1	pancreas:	n/a
30	chr17:16594459-16594509	PFSK-1	brain:	n/a
31	chr17:16594459-16594509	HCF	heart:	n/a
32	chr17:16594459-16594509	GM12892	blood:	n/a
33	chr17:16594459-16594509	CMK	blood:	n/a
34	chr17:16594459-16594509	AoSMC	blood vessel:	n/a
35	chr17:16594459-16594509	ovcar-3	ovarian:	n/a
36	chr17:16594459-16594509	AG09309	skin:	n/a
37	chr17:16594459-16594509	HL-60	blood:	n/a
38	chr17:16594459-16594509	NHDF-neo	bronchial:	n/a
39	chr17:16594459-16594509	IMR90	lung:	fetal
40	chr17:16594459-16594509	Jurkat	blood:	n/a
41	chr17:16594459-16594509	HRCEpiC	kidney:	n/a
42	chr17:16594459-16594509	HNPCEpiC	eye:	n/a
43	chr17:16594459-16594509	ProgFib	skin:	n/a
44	chr17:16594459-16594509	HCPEpiC	choroid plexus:	n/a
45	chr17:16594459-16594509	SK-N-SH_RA	brain:	n/a
46	chr17:16594459-16594509	MCF-7	breast:	n/a
47	chr17:16594459-16594509	K562	blood:	n/a
48	chr17:16594459-16594509	AG04449	skin:	fetal
49	chr17:16594459-16594509	HCM	heart:	n/a
50	chr17:16594459-16594509	GM19239	blood:	n/a

No data

Variant related genes	Relation type
RNU6-405P	CpG island

Extended variants
information (count: 11 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:11 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1063764	chr17:16171649-16662914	Weak transcription Strong transcription Genic enhancers ZNF genes & repeats Flanking Active TSS Enhancers Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	120 gene(s)	inside rSNPs	diseases
2	nsv1058448	chr17:16389870-16926287	Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Active TSS ZNF genes & repeats Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	53 gene(s)	inside rSNPs	diseases
3	esv2758442	chr17:16527056-16817437	Active TSS Bivalent Enhancer ZNF genes & repeats Enhancers Flanking Active TSS Weak transcription Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
4	esv2758676	chr17:16527056-16817437	Weak transcription Bivalent Enhancer Strong transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
5	nsv427991	chr17:16527056-16817437	Flanking Active TSS Enhancers Strong transcription Weak transcription Bivalent Enhancer Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
6	nsv907720	chr17:16557606-16758204	Flanking Active TSS Enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Weak transcription ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	24 gene(s)	inside rSNPs	diseases
7	esv2756642	chr17:16571504-16734163	Weak transcription Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
8	esv2757653	chr17:16571504-16764830	Bivalent Enhancer Weak transcription Enhancers Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
9	nsv984504	chr17:16572370-16776542	Enhancers Bivalent/Poised TSS Weak transcription Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
10	esv2635467	chr17:16589774-16757904	Enhancers Active TSS Weak transcription Genic enhancers Bivalent Enhancer Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
11	nsv978373	chr17:16594279-16649044	Bivalent/Poised TSS Active TSS Weak transcription Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
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