Variant report

Variant	rs563445377
Chromosome Location	chr6:146058774-146058775
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:146055707..146058502-chr6:146058595..146061607,5	MCF-7	breast:
2	chr6:146052168..146062191-chr6:146124046..146141258,59	K562	blood:
3	chr6:146047378..146061811-chr6:146118130..146137627,77	K562	blood:

Variant related genes	Relation type
ENSG00000118496	Chromatin interaction
ENSG00000270828	Chromatin interaction
ENSG00000112425	Chromatin interaction
ENSG00000235652	Chromatin interaction
ENSG00000270638	Chromatin interaction

Extended variants
information (count: 1 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv970354	chr6:146057495-146060252	Active TSS Enhancers Flanking Active TSS Weak transcription	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:146055600-146058800	Active TSS	Aorta	Aorta
2	chr6:146057200-146063200	Weak transcription	Lung	lung
3	chr6:146057600-146058800	Flanking Active TSS	Colon Smooth Muscle	Colon
4	chr6:146057600-146058800	Enhancers	Fetal Intestine Large	intestine
5	chr6:146057800-146058800	Enhancers	Primary T killer naive cells fromperipheralblood	blood
6	chr6:146058000-146058800	Enhancers	Fetal Brain Male	brain
7	chr6:146058200-146058800	Enhancers	Muscle Satellite Cultured Cells	--
8	chr6:146058200-146058800	Enhancers	Fetal Stomach	stomach
9	chr6:146058200-146058800	Flanking Active TSS	Rectal Smooth Muscle	rectum
10	chr6:146058200-146059000	Enhancers	Cortex derived primary cultured neurospheres	brain
11	chr6:146058200-146067600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
12	chr6:146058400-146058800	Enhancers	Fetal Brain Female	brain
13	chr6:146058400-146058800	Flanking Active TSS	Stomach Smooth Muscle	stomach
14	chr6:146058400-146059200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
15	chr6:146058400-146063000	Weak transcription	Thymus	Thymus
16	chr6:146058400-146064600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
17	chr6:146058400-146065200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
18	chr6:146058600-146058800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
19	chr6:146058600-146058800	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
20	chr6:146058600-146058800	Active TSS	Duodenum Smooth Muscle	Duodenum
21	chr6:146058600-146059000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
22	chr6:146058600-146070600	Weak transcription	Primary hematopoietic stem cells	blood

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