Variant report

Variant	rs56345132
Chromosome Location	chr18:44508833-44508834
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 42 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs11874582	0.94[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs11874634	0.90[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs11876274	0.82[EUR][1000 genomes]
rs11877650	0.83[EUR][1000 genomes]
rs4640275	0.85[AFR][1000 genomes]
rs55710513	0.85[AFR][1000 genomes]
rs55819334	0.84[EUR][1000 genomes]
rs56123148	0.94[AFR][1000 genomes];0.84[EUR][1000 genomes]
rs56298133	0.94[AFR][1000 genomes];0.84[EUR][1000 genomes]
rs56303451	0.90[AFR][1000 genomes];0.84[EUR][1000 genomes]
rs7234512	0.85[AFR][1000 genomes]
rs7238877	0.85[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs7240843	0.82[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs7240909	0.88[AFR][1000 genomes];0.84[EUR][1000 genomes]
rs7243015	0.90[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs7243309	0.85[AFR][1000 genomes]
rs72909190	0.85[AFR][1000 genomes]
rs72913060	0.85[AFR][1000 genomes]
rs72913070	0.85[AFR][1000 genomes]
rs72913076	0.85[AFR][1000 genomes]
rs72913080	0.85[AFR][1000 genomes]
rs72913096	0.85[AFR][1000 genomes]
rs72913098	0.85[AFR][1000 genomes]
rs72915060	0.85[AFR][1000 genomes]
rs72915074	0.82[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs72915093	0.94[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs72915096	0.94[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs72917159	0.94[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs72917161	0.94[AFR][1000 genomes];0.84[EUR][1000 genomes]
rs72917165	0.94[AFR][1000 genomes];0.84[EUR][1000 genomes]
rs72917176	0.94[AFR][1000 genomes];0.84[EUR][1000 genomes]
rs8089367	0.85[AFR][1000 genomes]
rs8092148	0.85[AFR][1000 genomes]
rs8094449	0.85[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv9629	chr18:44264693-44757511	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
2	esv2763189	chr18:44415779-44515384	Flanking Active TSS Strong transcription ZNF genes & repeats Enhancers Active TSS Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	nsv833639	chr18:44426363-44552719	Strong transcription Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
4	nsv1059378	chr18:44431832-44509052	Strong transcription Active TSS ZNF genes & repeats Weak transcription Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
5	nsv522397	chr18:44451644-44516088	Strong transcription Enhancers Flanking Active TSS Weak transcription Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
6	nsv576813	chr18:44481641-44531283	Enhancers Flanking Active TSS Weak transcription Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
7	nsv1057629	chr18:44500259-44539223	Enhancers Flanking Active TSS Weak transcription Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
8	nsv1062444	chr18:44503472-44539223	Enhancers Flanking Active TSS Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr18:44508400-44509000	ZNF genes & repeats	Duodenum Smooth Muscle	Duodenum
2	chr18:44508400-44509200	ZNF genes & repeats	Primary hematopoietic stem cells short term culture	blood

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