Variant report

Variant	rs563451473
Chromosome Location	chr3:139907178-139907179
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 3 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv998423	chr3:139526446-139947336	Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer Enhancers Bivalent/Poised TSS Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv829739	chr3:139797496-140002685	Enhancers Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Active TSS Strong transcription Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
3	nsv1008578	chr3:139907172-139942453	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:139901600-139915000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr3:139902800-139907400	Enhancers	Fetal Muscle Leg	muscle
3	chr3:139903400-139907600	Enhancers	Skeletal Muscle Male	skeletal muscle
4	chr3:139903600-139908000	Enhancers	Fetal Heart	heart
5	chr3:139904800-139907200	Enhancers	Brain Substantia Nigra	brain
6	chr3:139905000-139908000	Enhancers	Brain Germinal Matrix	brain
7	chr3:139905200-139908000	Enhancers	Skeletal Muscle Female	skeletal muscle
8	chr3:139905800-139907200	Enhancers	Lung	lung
9	chr3:139905800-139907400	Enhancers	Ovary	ovary
10	chr3:139905800-139907400	Enhancers	Pancreas	Pancrea
11	chr3:139905800-139907400	Enhancers	Psoas Muscle	Psoas
12	chr3:139905800-139907400	Enhancers	Right Atrium	heart
13	chr3:139905800-139907600	Enhancers	Left Ventricle	heart
14	chr3:139905800-139907800	Enhancers	Right Ventricle	heart
15	chr3:139906400-139907200	Weak transcription	Aorta	Aorta
16	chr3:139906400-139913000	Weak transcription	HSMMtube	muscle
17	chr3:139907000-139907400	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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