Variant report

Variant	rs56346515
Chromosome Location	chr15:92909049-92909050
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs55901226	1.00[AMR][1000 genomes]
rs56191645	1.00[AMR][1000 genomes]
rs57782740	1.00[AMR][1000 genomes]
rs59117016	1.00[AMR][1000 genomes]
rs60284643	1.00[AMR][1000 genomes]
rs60795899	1.00[AMR][1000 genomes]
rs74029004	1.00[AMR][1000 genomes]
rs74029009	1.00[AMR][1000 genomes]
rs74030555	1.00[AMR][1000 genomes]
rs74030558	1.00[AMR][1000 genomes]
rs74030559	1.00[AMR][1000 genomes]
rs74030560	1.00[AMR][1000 genomes]
rs74030561	1.00[AMR][1000 genomes]
rs74030563	1.00[AMR][1000 genomes]
rs74030564	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv948621	chr15:92688981-93158095	Enhancers Bivalent/Poised TSS ZNF genes & repeats Weak transcription Strong transcription Genic enhancers Flanking Active TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
2	nsv1049561	chr15:92758434-93097965	Enhancers Weak transcription Bivalent/Poised TSS Active TSS Genic enhancers Flanking Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
3	nsv1037972	chr15:92804908-93270761	Flanking Bivalent TSS/Enh Enhancers Weak transcription Strong transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	39 gene(s)	inside rSNPs	diseases
4	nsv1041582	chr15:92879844-92910306	Bivalent Enhancer Weak transcription Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
5	nsv869844	chr15:92881526-92935448	Flanking Active TSS Enhancers Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:92890400-92911800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr15:92904000-92910000	Enhancers	Breast Myoepithelial Primary Cells	Breast
3	chr15:92907200-92909200	Enhancers	Stomach Mucosa	stomach
4	chr15:92907200-92909400	Enhancers	HUES64 Cell Line	embryonic stem cell
5	chr15:92907200-92909800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
6	chr15:92907400-92909400	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
7	chr15:92907800-92909400	Enhancers	Fetal Intestine Large	intestine
8	chr15:92907800-92909400	Enhancers	Fetal Intestine Small	intestine
9	chr15:92908000-92910400	Enhancers	HMEC	breast
10	chr15:92908200-92909200	Enhancers	ES-WA7 Cell Line	embryonic stem cell
11	chr15:92908200-92909600	Enhancers	NH-A	brain
12	chr15:92908400-92909200	Flanking Active TSS	ES-I3 Cell Line	embryonic stem cell
13	chr15:92908400-92909400	Enhancers	HepG2	liver
14	chr15:92908800-92909600	Enhancers	HUES6 Cell Line	embryonic stem cell
15	chr15:92908800-92909800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
16	chr15:92908800-92909800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
17	chr15:92908800-92910200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
18	chr15:92908800-92910600	Enhancers	NHEK	skin

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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