Variant report

Variant	rs563467823
Chromosome Location	chr15:43660376-43660377
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:43660016..43662796-chr15:43702586..43705983,3	K562	blood:
2	chr15:43632397..43634657-chr15:43658728..43661211,2	K562	blood:

Variant related genes	Relation type
ENSG00000067369	Chromatin interaction

Extended variants
information (count: 13 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:13 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv534649	chr15:43591116-43851142	Flanking Active TSS Weak transcription Active TSS Transcr. at gene 5' and 3' Strong transcription Enhancers Genic enhancers Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	45 gene(s)	inside rSNPs	diseases
2	nsv1512	chr15:43616834-43661646	Strong transcription Flanking Active TSS Weak transcription ZNF genes & repeats Genic enhancers Enhancers Transcr. at gene 5' and 3' Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
3	esv1846172	chr15:43632138-44116986	Bivalent Enhancer Weak transcription Genic enhancers Strong transcription Active TSS Enhancers Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	101 gene(s)	inside rSNPs	diseases
4	esv2618501	chr15:43659722-43661347	Weak transcription Enhancers Genic enhancers ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Flanking Active TSS Active TSS	TF binding region Chromatin interactive region	4 gene(s)	inside rSNPs	n/a
5	esv8406	chr15:43660197-43661034	Enhancers Weak transcription Genic enhancers Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Active TSS	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	n/a
6	esv2020159	chr15:43660232-43660967	Weak transcription Strong transcription Enhancers Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Active TSS	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	n/a
7	esv3311150	chr15:43660310-43660823	Genic enhancers Strong transcription Weak transcription Transcr. at gene 5' and 3' ZNF genes & repeats Enhancers Flanking Active TSS	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	n/a
8	esv3515786	chr15:43660336-43660861	Weak transcription Strong transcription Enhancers Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	n/a
9	esv3515782	chr15:43660347-43660846	ZNF genes & repeats Weak transcription Strong transcription Genic enhancers Enhancers Flanking Active TSS Transcr. at gene 5' and 3'	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
10	esv3515783	chr15:43660353-43660808	Weak transcription Genic enhancers Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Enhancers Flanking Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
11	esv3515784	chr15:43660360-43660790	Strong transcription Weak transcription ZNF genes & repeats Genic enhancers Enhancers Transcr. at gene 5' and 3' Flanking Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
12	esv3311153	chr15:43660366-43660750	Weak transcription Genic enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Enhancers Transcr. at gene 5' and 3'	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
13	esv3311154	chr15:43660369-43660821	ZNF genes & repeats Weak transcription Strong transcription Enhancers Transcr. at gene 5' and 3' Genic enhancers Flanking Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:43650200-43660400	ZNF genes & repeats	Primary T helper cells fromperipheralblood	blood
2	chr15:43650200-43661600	ZNF genes & repeats	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr15:43650600-43661400	Strong transcription	Foreskin Fibroblast Primary Cells skin02	Skin
4	chr15:43651000-43660400	Strong transcription	Placenta Amnion	Placenta Amnion
5	chr15:43654000-43661200	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
6	chr15:43654000-43661200	Strong transcription	Placenta	Placenta
7	chr15:43654400-43662000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
8	chr15:43654600-43661800	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
9	chr15:43654800-43661000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
10	chr15:43654800-43661000	Weak transcription	Stomach Mucosa	stomach
11	chr15:43654800-43661200	Strong transcription	H1 Cell Line	embryonic stem cell
12	chr15:43654800-43661400	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
13	chr15:43654800-43661800	Strong transcription	HSMM	muscle
14	chr15:43655000-43660400	Strong transcription	Stomach Smooth Muscle	stomach
15	chr15:43655200-43661000	Strong transcription	K562	blood
16	chr15:43655200-43661400	Strong transcription	NHDF-Ad	bronchial
17	chr15:43655800-43661000	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
18	chr15:43656000-43660600	Strong transcription	iPS-18 Cell Line	embryonic stem cell
19	chr15:43656000-43660600	Strong transcription	Rectal Mucosa Donor 31	rectum
20	chr15:43656000-43661400	Strong transcription	HUES48 Cell Line	embryonic stem cell
21	chr15:43656000-43661600	Strong transcription	iPS-20b Cell Line	embryonic stem cell
22	chr15:43656200-43661600	Strong transcription	HUES6 Cell Line	embryonic stem cell
23	chr15:43656400-43660600	Strong transcription	HMEC	breast
24	chr15:43656400-43661800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
25	chr15:43656600-43660800	Weak transcription	Primary T cells fromperipheralblood	blood
26	chr15:43656600-43661000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
27	chr15:43656600-43661200	Weak transcription	Primary T helper cells PMA-I stimulated	--
28	chr15:43656600-43661200	Strong transcription	Fetal Muscle Trunk	muscle
29	chr15:43656600-43661400	Strong transcription	HUES64 Cell Line	embryonic stem cell
30	chr15:43656600-43661800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
31	chr15:43656800-43661000	Weak transcription	Primary B cells from peripheral blood	blood
32	chr15:43656800-43661800	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
33	chr15:43656800-43661800	Weak transcription	Pancreatic Islets	Pancreatic Islet
34	chr15:43657400-43660400	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
35	chr15:43657400-43660600	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
36	chr15:43657600-43661000	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
37	chr15:43657800-43660600	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
38	chr15:43657800-43661800	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
39	chr15:43658000-43660400	Strong transcription	Primary T cells from cord blood	blood
40	chr15:43658000-43660400	Strong transcription	NHEK	skin
41	chr15:43658000-43661400	Strong transcription	Foreskin Melanocyte Primary Cells skin01	Skin
42	chr15:43658800-43660400	Strong transcription	Primary B cells from cord blood	blood
43	chr15:43658800-43661200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
44	chr15:43658800-43661800	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
45	chr15:43659000-43661000	Weak transcription	Right Ventricle	heart
46	chr15:43659000-43661000	Weak transcription	Small Intestine	intestine
47	chr15:43659000-43661600	Weak transcription	Brain Substantia Nigra	brain
48	chr15:43659200-43661400	Weak transcription	HSMMtube	muscle
49	chr15:43659200-43662200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
50	chr15:43659400-43660400	Transcr. at gene 5' and 3'	Brain Germinal Matrix	brain

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