Variant report

Variant	rs563480522
Chromosome Location	chrX:76824805-76824806
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv531129	chrX:76703995-77038914	Strong transcription Weak transcription Enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
2	nsv529412	chrX:76711812-76957972	Weak transcription Strong transcription ZNF genes & repeats Enhancers Genic enhancers Flanking Active TSS Active TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region miRNA target site	2 gene(s)	inside rSNPs	diseases
3	esv3382160	chrX:76731246-76970544	Weak transcription Genic enhancers Strong transcription Active TSS Enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region miRNA target site	2 gene(s)	inside rSNPs	diseases
4	esv3368873	chrX:76731246-77122844	Weak transcription ZNF genes & repeats Active TSS Enhancers Strong transcription Flanking Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases
5	esv3367037	chrX:76731346-77001644	Weak transcription Strong transcription Enhancers ZNF genes & repeats Flanking Active TSS Genic enhancers Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases
6	esv3399586	chrX:76799846-77022144	Strong transcription ZNF genes & repeats Flanking Active TSS Weak transcription Enhancers Genic enhancers Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
7	esv3413031	chrX:76808046-76981644	Weak transcription Strong transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
8	esv3443309	chrX:76822346-77048294	Weak transcription Strong transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:80 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chrX:76756600-76845600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
2	chrX:76766400-76833600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
3	chrX:76766800-76834000	Weak transcription	Thymus	Thymus
4	chrX:76767000-76869800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
5	chrX:76777200-76852000	Weak transcription	HSMM	muscle
6	chrX:76778800-76833400	Weak transcription	Duodenum Mucosa	Duodenum
7	chrX:76783400-76851000	Weak transcription	H1 Cell Line	embryonic stem cell
8	chrX:76793000-76833600	Weak transcription	Fetal Thymus	thymus
9	chrX:76799200-76851000	Weak transcription	Rectal Smooth Muscle	rectum
10	chrX:76802400-76843000	Weak transcription	Hela-S3	cervix
11	chrX:76802600-76838600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
12	chrX:76802600-76872400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
13	chrX:76807000-76914800	Weak transcription	NHDF-Ad	bronchial
14	chrX:76808600-76833400	Weak transcription	Primary neutrophils fromperipheralblood	blood
15	chrX:76808600-76833400	Weak transcription	Fetal Brain Female	brain
16	chrX:76808600-76853400	Weak transcription	Rectal Mucosa Donor 31	rectum
17	chrX:76809000-76889200	Weak transcription	Rectal Mucosa Donor 29	rectum
18	chrX:76809400-76827600	Weak transcription	Osteobl	bone
19	chrX:76810200-76825800	Weak transcription	Duodenum Smooth Muscle	Duodenum
20	chrX:76810400-76833400	Weak transcription	Fetal Muscle Trunk	muscle
21	chrX:76811200-76833400	Weak transcription	Skeletal Muscle Female	skeletal muscle
22	chrX:76811400-76877000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
23	chrX:76811600-76844600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
24	chrX:76811800-76826400	Weak transcription	Primary T cells fromperipheralblood	blood
25	chrX:76812400-76833400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
26	chrX:76812600-76833400	Weak transcription	Primary monocytes fromperipheralblood	blood
27	chrX:76812800-76826000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
28	chrX:76812800-76833600	Weak transcription	Ovary	ovary
29	chrX:76813000-76833200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
30	chrX:76813000-76833800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
31	chrX:76813000-76853200	Weak transcription	Fetal Kidney	kidney
32	chrX:76813000-76859000	Weak transcription	Sigmoid Colon	Sigmoid Colon
33	chrX:76813200-76828400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
34	chrX:76813200-76833400	Weak transcription	Monocytes-CD14+_RO01746	blood
35	chrX:76813200-76834000	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
36	chrX:76813200-76843800	Weak transcription	Primary T helper cells PMA-I stimulated	--
37	chrX:76813200-76955600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
38	chrX:76814000-76844600	Weak transcription	Placenta	Placenta
39	chrX:76814000-76905600	Weak transcription	NH-A	brain
40	chrX:76814400-76826200	Weak transcription	HUES64 Cell Line	embryonic stem cell
41	chrX:76814400-76832200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
42	chrX:76815000-76827800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
43	chrX:76815000-76833800	Weak transcription	Fetal Intestine Large	intestine
44	chrX:76816000-76832600	Weak transcription	A549	lung
45	chrX:76816600-76855200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
46	chrX:76817600-76843400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
47	chrX:76817800-76876600	Weak transcription	Small Intestine	intestine
48	chrX:76818000-76833400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
49	chrX:76818200-76849200	Weak transcription	Placenta Amnion	Placenta Amnion
50	chrX:76819400-76833800	Weak transcription	Stomach Smooth Muscle	stomach

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