Variant report

Variant	rs56348204
Chromosome Location	chr11:94273397-94273398
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:94272866..94275420-chr11:94275644..94280283,4	MCF-7	breast:
2	chr11:94272096..94274160-chr11:94299141..94300708,2	K562	blood:

Variant related genes	Relation type
ENSG00000196371	Chromatin interaction
ENSG00000134627	Chromatin interaction

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs58502184	0.80[AFR][1000 genomes]
rs73521520	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73521554	0.80[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3464764	chr11:94271932-94273472	Enhancers Weak transcription Active TSS Flanking Active TSS	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	n/a
2	esv3502369	chr11:94271935-94273626	Weak transcription Enhancers Active TSS Flanking Active TSS	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	n/a
3	esv3464753	chr11:94271947-94273485	Weak transcription Enhancers Flanking Active TSS Active TSS	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	n/a
4	esv3464742	chr11:94271953-94273423	Weak transcription Flanking Active TSS Active TSS Enhancers	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	n/a
5	esv3502370	chr11:94271965-94273459	Weak transcription Enhancers Active TSS Flanking Active TSS	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	n/a
6	esv3464775	chr11:94272006-94273398	Weak transcription Enhancers Flanking Active TSS Active TSS	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	n/a
7	esv3502371	chr11:94272035-94273401	Enhancers Weak transcription Flanking Active TSS Active TSS	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:94267600-94276200	Weak transcription	Duodenum Smooth Muscle	Duodenum
2	chr11:94267600-94276400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
3	chr11:94268800-94273400	Enhancers	Fetal Intestine Large	intestine
4	chr11:94268800-94273800	Enhancers	Duodenum Mucosa	Duodenum
5	chr11:94270600-94276400	Weak transcription	Fetal Lung	lung
6	chr11:94271000-94276200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
7	chr11:94271000-94276400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
8	chr11:94271200-94273400	Weak transcription	Colonic Mucosa	Colon
9	chr11:94271200-94273400	Weak transcription	Sigmoid Colon	Sigmoid Colon
10	chr11:94271200-94276000	Weak transcription	Primary monocytes fromperipheralblood	blood
11	chr11:94271200-94276000	Weak transcription	Monocytes-CD14+_RO01746	blood
12	chr11:94271200-94276200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
13	chr11:94271200-94276200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
14	chr11:94271200-94276200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
15	chr11:94271200-94276200	Weak transcription	Aorta	Aorta
16	chr11:94271200-94276400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
17	chr11:94271200-94276400	Weak transcription	Adipose Nuclei	Adipose
18	chr11:94271200-94276600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
19	chr11:94271200-94276800	Weak transcription	HMEC	breast
20	chr11:94271800-94274000	Enhancers	Fetal Intestine Small	intestine
21	chr11:94272400-94276400	Enhancers	Rectal Mucosa Donor 31	rectum
22	chr11:94272600-94275400	Enhancers	Stomach Mucosa	stomach
23	chr11:94272600-94276800	Weak transcription	Small Intestine	intestine
24	chr11:94272800-94273400	Active TSS	Rectal Mucosa Donor 29	rectum

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