Variant report

Variant	rs563498615
Chromosome Location	chr2:101226813-101226814
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr2:101225173..101228085-chr2:101618841..101622478,3	MCF-7	breast:
2	chr2:101226411..101227351-chr2:101600953..101601880,6	MCF-7	breast:
3	chr2:101226497..101227338-chr2:101486931..101487568,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000071082	Chromatin interaction

Extended variants
information (count: 7 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1007777	chr2:100816913-101308914	Active TSS Enhancers Strong transcription Flanking Active TSS Weak transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	30 gene(s)	inside rSNPs	diseases
2	nsv535844	chr2:100816913-101308914	Flanking Bivalent TSS/Enh Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Bivalent Enhancer Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	30 gene(s)	inside rSNPs	diseases
3	nsv916792	chr2:101021066-101525200	Enhancers Weak transcription Strong transcription Flanking Active TSS Bivalent Enhancer Genic enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases
4	nsv582532	chr2:101029002-101531943	Flanking Active TSS Enhancers Weak transcription Active TSS Bivalent/Poised TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases
5	nsv834312	chr2:101044438-101238166	Strong transcription Flanking Active TSS Weak transcription Enhancers Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
6	nsv834314	chr2:101210940-101410477	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
7	esv3430731	chr2:101226454-101226846	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:101210400-101231800	Weak transcription	Right Atrium	heart
2	chr2:101220400-101228800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr2:101221000-101227000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
4	chr2:101221200-101227000	Weak transcription	Brain Hippocampus Middle	brain
5	chr2:101223400-101231000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
6	chr2:101223400-101233600	Weak transcription	Gastric	stomach
7	chr2:101226600-101227000	Enhancers	Muscle Satellite Cultured Cells	--
8	chr2:101226600-101227200	Bivalent Enhancer	Primary T cells fromperipheralblood	blood
9	chr2:101226600-101227400	Enhancers	HSMMtube	muscle
10	chr2:101226600-101227600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
11	chr2:101226600-101227600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
12	chr2:101226800-101227000	Enhancers	Skeletal Muscle Female	skeletal muscle
13	chr2:101226800-101227200	Enhancers	Brain Substantia Nigra	brain
14	chr2:101226800-101227200	Enhancers	NHDF-Ad	bronchial
15	chr2:101226800-101227200	Enhancers	NHLF	lung
16	chr2:101226800-101227200	Flanking Active TSS	Osteobl	bone
17	chr2:101226800-101227600	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
18	chr2:101226800-101227800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
19	chr2:101226800-101228000	Enhancers	Skeletal Muscle Male	skeletal muscle
20	chr2:101226800-101228400	Enhancers	Fetal Muscle Trunk	muscle

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