Variant report

Variant	rs56351418
Chromosome Location	chr7:63966673-63966674
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 103 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:86)

rs_ID	r²[population]
rs11760441	0.85[EUR][1000 genomes]
rs11760623	0.83[EUR][1000 genomes]
rs11761642	0.83[EUR][1000 genomes]
rs11763264	0.82[EUR][1000 genomes]
rs11763268	0.81[EUR][1000 genomes]
rs11764145	0.83[EUR][1000 genomes]
rs11764842	0.83[EUR][1000 genomes]
rs11765236	0.83[EUR][1000 genomes]
rs11766677	0.84[EUR][1000 genomes]
rs11768338	0.88[EUR][1000 genomes]
rs11768668	0.83[EUR][1000 genomes]
rs11768840	0.88[EUR][1000 genomes]
rs11771181	0.87[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs11772062	0.87[EUR][1000 genomes]
rs12113093	0.81[EUR][1000 genomes]
rs12113237	0.82[EUR][1000 genomes]
rs17138886	0.88[EUR][1000 genomes]
rs17146398	0.88[EUR][1000 genomes]
rs17840384	0.88[EUR][1000 genomes]
rs1810683	0.80[ASN][1000 genomes]
rs1853407	0.83[EUR][1000 genomes]
rs2862879	0.91[EUR][1000 genomes]
rs34764583	0.86[EUR][1000 genomes]
rs35224539	0.87[EUR][1000 genomes]
rs35255833	0.89[EUR][1000 genomes]
rs4718083	0.83[AMR][1000 genomes];0.97[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs56799822	0.84[EUR][1000 genomes]
rs57093212	0.89[EUR][1000 genomes]
rs57196191	0.87[EUR][1000 genomes]
rs57198153	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs58450777	0.83[EUR][1000 genomes]
rs58967958	0.83[EUR][1000 genomes]
rs58990166	0.84[EUR][1000 genomes]
rs59015730	0.82[EUR][1000 genomes]
rs59622152	0.84[EUR][1000 genomes]
rs59856772	0.88[EUR][1000 genomes]
rs60118162	0.89[EUR][1000 genomes]
rs6460161	0.85[EUR][1000 genomes]
rs6952579	0.82[EUR][1000 genomes]
rs6954330	0.83[EUR][1000 genomes]
rs6954460	0.83[EUR][1000 genomes]
rs6954776	0.88[EUR][1000 genomes]
rs6964427	0.84[EUR][1000 genomes]
rs6967116	0.91[EUR][1000 genomes]
rs6968279	0.83[EUR][1000 genomes]
rs6969879	0.85[EUR][1000 genomes]
rs6976217	0.83[EUR][1000 genomes]
rs6977201	0.82[EUR][1000 genomes]
rs73127055	0.88[EUR][1000 genomes]
rs73128725	0.88[EUR][1000 genomes]
rs73128743	0.88[EUR][1000 genomes]
rs73128750	0.88[EUR][1000 genomes]
rs73128752	0.88[EUR][1000 genomes]
rs73128756	0.88[EUR][1000 genomes]
rs73128757	0.88[EUR][1000 genomes]
rs73128759	0.88[EUR][1000 genomes]
rs73128760	0.88[EUR][1000 genomes]
rs73128768	0.85[EUR][1000 genomes]
rs73128770	0.85[EUR][1000 genomes]
rs73128772	0.85[EUR][1000 genomes]
rs73130731	0.85[EUR][1000 genomes]
rs73130733	0.85[EUR][1000 genomes]
rs73130741	0.82[EUR][1000 genomes]
rs73130748	0.81[EUR][1000 genomes]
rs73130750	0.82[EUR][1000 genomes]
rs73130757	0.82[EUR][1000 genomes]
rs73130760	0.83[EUR][1000 genomes]
rs73130769	0.83[EUR][1000 genomes]
rs73130774	0.83[EUR][1000 genomes]
rs73130775	0.83[EUR][1000 genomes]
rs73130779	0.83[EUR][1000 genomes]
rs7776937	0.85[EUR][1000 genomes]
rs7778593	0.88[EUR][1000 genomes]
rs7785818	0.83[EUR][1000 genomes]
rs7787877	0.83[EUR][1000 genomes]
rs7792261	0.86[EUR][1000 genomes]
rs7793429	0.83[EUR][1000 genomes]
rs7793623	0.88[EUR][1000 genomes]
rs7796427	0.81[ASN][1000 genomes]
rs7801917	0.83[EUR][1000 genomes]
rs7802768	0.88[EUR][1000 genomes]
rs7803294	0.86[EUR][1000 genomes]
rs7806288	0.83[EUR][1000 genomes]
rs7806747	0.83[EUR][1000 genomes]
rs9918511	0.83[EUR][1000 genomes]
rs9918574	0.83[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:17 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv888255	chr7:63175168-63990100	Active TSS ZNF genes & repeats Weak transcription Enhancers Flanking Active TSS Strong transcription Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	57 gene(s)	inside rSNPs	diseases
2	nsv888259	chr7:63363001-64009193	ZNF genes & repeats Weak transcription Enhancers Strong transcription Active TSS Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	54 gene(s)	inside rSNPs	diseases
3	nsv1016466	chr7:63438466-63969492	ZNF genes & repeats Active TSS Flanking Active TSS Weak transcription Enhancers Strong transcription Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	41 gene(s)	inside rSNPs	diseases
4	nsv429759	chr7:63662150-64110550	Weak transcription ZNF genes & repeats Enhancers Active TSS Strong transcription Flanking Active TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	24 gene(s)	inside rSNPs	diseases
5	nsv429760	chr7:63687850-64110550	Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
6	esv2422405	chr7:63709739-64632341	Enhancers Bivalent Enhancer Active TSS Weak transcription ZNF genes & repeats Strong transcription Bivalent/Poised TSS Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	59 gene(s)	inside rSNPs	diseases
7	nsv427787	chr7:63741770-64419520	Weak transcription Strong transcription Bivalent Enhancer Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	42 gene(s)	inside rSNPs	diseases
8	nsv429761	chr7:63747498-64096138	Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Enhancers Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
9	esv2764000	chr7:63766980-64275251	Flanking Active TSS Weak transcription ZNF genes & repeats Enhancers Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	33 gene(s)	inside rSNPs	diseases
10	nsv429762	chr7:63790450-64110550	ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS Enhancers Strong transcription Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
11	esv2755057	chr7:63819849-64345822	Strong transcription Weak transcription ZNF genes & repeats Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	32 gene(s)	inside rSNPs	diseases
12	nsv1031703	chr7:63839601-64225952	Active TSS Weak transcription ZNF genes & repeats Strong transcription Flanking Active TSS Enhancers Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	19 gene(s)	inside rSNPs	diseases
13	nsv464518	chr7:63881238-64506904	Enhancers ZNF genes & repeats Bivalent/Poised TSS Weak transcription Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Strong transcription Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	43 gene(s)	inside rSNPs	diseases
14	nsv607312	chr7:63881238-64506904	Active TSS Weak transcription Flanking Active TSS Enhancers Genic enhancers Strong transcription ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	43 gene(s)	inside rSNPs	diseases
15	nsv1023042	chr7:63956027-64116232	Flanking Active TSS Weak transcription Enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Active TSS Bivalent Enhancer Bivalent/Poised TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
16	nsv970855	chr7:63959414-64023731	ZNF genes & repeats Weak transcription Enhancers Active TSS Genic enhancers Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
17	nsv888271	chr7:63961212-64295884	Strong transcription Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	21 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs56351418	ZNF107	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:28 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:63956200-63968800	Weak transcription	Ovary	ovary
2	chr7:63961400-63967600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
3	chr7:63961800-63969000	Weak transcription	HSMM	muscle
4	chr7:63963400-63969000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
5	chr7:63963400-63970000	Weak transcription	Hela-S3	cervix
6	chr7:63964400-63969000	Weak transcription	Psoas Muscle	Psoas
7	chr7:63964600-63968800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
8	chr7:63964600-63997800	ZNF genes & repeats	Liver	Liver
9	chr7:63965000-63968600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
10	chr7:63965000-63969600	Weak transcription	Left Ventricle	heart
11	chr7:63965000-63970000	Weak transcription	Skeletal Muscle Female	skeletal muscle
12	chr7:63965000-63970400	ZNF genes & repeats	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
13	chr7:63965000-63994800	ZNF genes & repeats	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
14	chr7:63965600-63968800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
15	chr7:63965800-63968800	Weak transcription	Dnd41	blood
16	chr7:63966200-63966800	ZNF genes & repeats	IMR90 fetal lung fibroblasts Cell Line	lung
17	chr7:63966200-63966800	ZNF genes & repeats	Cortex derived primary cultured neurospheres	brain
18	chr7:63966200-63966800	ZNF genes & repeats	Aorta	Aorta
19	chr7:63966200-63968800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
20	chr7:63966200-63997400	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
21	chr7:63966400-63968800	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
22	chr7:63966400-63969000	Weak transcription	Muscle Satellite Cultured Cells	--
23	chr7:63966400-63969400	Weak transcription	NH-A	brain
24	chr7:63966400-63975000	ZNF genes & repeats	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
25	chr7:63966600-63966800	ZNF genes & repeats	Lung	lung
26	chr7:63966600-63967400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
27	chr7:63966600-63969000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
28	chr7:63966600-63981600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links