Variant report

Variant	rs56351600
Chromosome Location	chr11:72483841-72483842
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:9)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:9 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr11:72472827..72477869-chr11:72480503..72483880,7	K562	blood:
2	chr11:72481116..72484706-chr11:72524203..72527350,3	MCF-7	breast:
3	chr11:72482996..72484848-chr11:72502163..72504958,3	K562	blood:
4	chr11:72479006..72480656-chr11:72483833..72486270,2	MCF-7	breast:
5	chr11:72483759..72484574-chr11:72497146..72497688,2	MCF-7	breast:
6	chr11:72479449..72484784-chr11:72523025..72526806,6	MCF-7	breast:
7	chr11:72483759..72484574-chr11:72496995..72498109,5	MCF-7	breast:
8	chr11:72461544..72464973-chr11:72481706..72484901,3	K562	blood:
9	chr11:72483043..72485694-chr11:72531922..72533495,2	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000186635	Chromatin interaction
ENSG00000214530	Chromatin interaction
ENSG00000168010	Chromatin interaction
ENSG00000202522	Chromatin interaction

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs55669705	1.00[AMR][1000 genomes]
rs55742663	1.00[AMR][1000 genomes]
rs55949049	1.00[AMR][1000 genomes]
rs56192870	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7940683	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1806140	chr11:72268466-72546175	Enhancers Transcr. at gene 5' and 3' Strong transcription Genic enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	77 gene(s)	inside rSNPs	diseases
2	esv3394774	chr11:72320884-72694077	Genic enhancers Weak transcription Strong transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	73 gene(s)	inside rSNPs	diseases
3	nsv825992	chr11:72476174-72524295	Weak transcription Bivalent Enhancer Enhancers Strong transcription Genic enhancers Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	21 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:95 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:72464400-72491400	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
2	chr11:72464600-72492000	Weak transcription	Primary hematopoietic stem cells	blood
3	chr11:72470000-72491400	Weak transcription	Aorta	Aorta
4	chr11:72470400-72486800	Weak transcription	Primary neutrophils fromperipheralblood	blood
5	chr11:72470400-72491000	Weak transcription	Brain Germinal Matrix	brain
6	chr11:72470600-72492000	Weak transcription	Primary T cells from cord blood	blood
7	chr11:72470800-72484200	Weak transcription	Fetal Brain Female	brain
8	chr11:72470800-72484400	Weak transcription	Ovary	ovary
9	chr11:72472200-72484400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
10	chr11:72474200-72491400	Weak transcription	Primary B cells from cord blood	blood
11	chr11:72474600-72484200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
12	chr11:72474600-72490600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
13	chr11:72474800-72484200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
14	chr11:72475000-72487000	Weak transcription	Spleen	Spleen
15	chr11:72475400-72491000	Weak transcription	Primary B cells from peripheral blood	blood
16	chr11:72476000-72487000	Weak transcription	Lung	lung
17	chr11:72480000-72485600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
18	chr11:72480200-72484000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
19	chr11:72480200-72489800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
20	chr11:72480800-72486400	Enhancers	Placenta Amnion	Placenta Amnion
21	chr11:72481600-72484000	Genic enhancers	Liver	Liver
22	chr11:72481600-72484200	Strong transcription	Placenta	Placenta
23	chr11:72481600-72484200	Genic enhancers	Pancreas	Pancrea
24	chr11:72481600-72484600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
25	chr11:72481600-72485200	Genic enhancers	Rectal Mucosa Donor 29	rectum
26	chr11:72481600-72485400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
27	chr11:72481600-72486600	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
28	chr11:72481600-72486600	Enhancers	Fetal Muscle Trunk	muscle
29	chr11:72481600-72489800	Genic enhancers	Gastric	stomach
30	chr11:72481800-72485400	Genic enhancers	Fetal Stomach	stomach
31	chr11:72481800-72485400	Genic enhancers	Sigmoid Colon	Sigmoid Colon
32	chr11:72481800-72492000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
33	chr11:72482000-72486600	Genic enhancers	Fetal Adrenal Gland	Adrenal Gland
34	chr11:72482000-72489400	Genic enhancers	Fetal Intestine Large	intestine
35	chr11:72482200-72484200	Enhancers	HSMMtube	muscle
36	chr11:72482200-72485000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
37	chr11:72482200-72485000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
38	chr11:72482200-72485000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
39	chr11:72482200-72485000	Enhancers	NH-A	brain
40	chr11:72482200-72485000	Enhancers	NHDF-Ad	bronchial
41	chr11:72482200-72485000	Enhancers	NHLF	lung
42	chr11:72482200-72485200	Genic enhancers	Rectal Mucosa Donor 31	rectum
43	chr11:72482200-72485600	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
44	chr11:72482200-72486200	Enhancers	Brain Angular Gyrus	brain
45	chr11:72482200-72486400	Enhancers	Brain Anterior Caudate	brain
46	chr11:72482200-72487800	Genic enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
47	chr11:72482200-72488200	Genic enhancers	Fetal Intestine Small	intestine
48	chr11:72482400-72485000	Enhancers	Duodenum Smooth Muscle	Duodenum
49	chr11:72482400-72485200	Enhancers	Osteobl	bone
50	chr11:72482400-72485600	Enhancers	Skeletal Muscle Female	skeletal muscle

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