Variant report

Variant	rs563520187
Chromosome Location	chr5:93136937-93136938
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr5:92943322..92944183-chr5:93136863..93137431,3	MCF-7	breast:
2	chr5:93136887..93137720-chr5:93230421..93230931,2	MCF-7	breast:
3	chr5:92956324..92956911-chr5:93136722..93137264,2	MCF-7	breast:
4	chr5:92918605..92921388-chr5:93136060..93138274,2	MCF-7	breast:
5	chr5:92932499..92933302-chr5:93136722..93137235,2	MCF-7	breast:
6	chr5:93127282..93128006-chr5:93136216..93137176,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000251725	Chromatin interaction
ENSG00000237187	Chromatin interaction
ENSG00000175745	Chromatin interaction

Extended variants
information (count: 4 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532196	chr5:92933949-93573527	Strong transcription Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
2	nsv830405	chr5:93086825-93258518	Enhancers Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	esv1796354	chr5:93120618-93138786	Enhancers Weak transcription Flanking Active TSS Strong transcription Genic enhancers Active TSS ZNF genes & repeats	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
4	nsv882384	chr5:93136661-93380123	Weak transcription Enhancers ZNF genes & repeats Strong transcription Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:82 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:93101200-93164200	Weak transcription	Sigmoid Colon	Sigmoid Colon
2	chr5:93108800-93137400	Weak transcription	Right Ventricle	heart
3	chr5:93109200-93159600	Weak transcription	Thymus	Thymus
4	chr5:93111400-93142200	Weak transcription	Dnd41	blood
5	chr5:93111400-93159000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
6	chr5:93111600-93179800	Weak transcription	Left Ventricle	heart
7	chr5:93118200-93137400	Weak transcription	Primary T cells fromperipheralblood	blood
8	chr5:93120200-93161800	Weak transcription	Primary B cells from peripheral blood	blood
9	chr5:93131000-93137400	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
10	chr5:93131000-93143800	Weak transcription	Fetal Intestine Large	intestine
11	chr5:93131200-93137400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
12	chr5:93131200-93139200	Weak transcription	Gastric	stomach
13	chr5:93131200-93148800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
14	chr5:93131200-93179200	Weak transcription	Ovary	ovary
15	chr5:93131400-93141200	Weak transcription	Primary T cells from cord blood	blood
16	chr5:93131400-93148600	Weak transcription	Primary B cells from cord blood	blood
17	chr5:93132600-93157800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
18	chr5:93132800-93140400	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
19	chr5:93136000-93137400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
20	chr5:93136200-93137000	Enhancers	Brain Germinal Matrix	brain
21	chr5:93136200-93137600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
22	chr5:93136200-93137600	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
23	chr5:93136200-93137800	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
24	chr5:93136200-93137800	Enhancers	Hela-S3	cervix
25	chr5:93136400-93137000	Enhancers	iPS-15b Cell Line	embryonic stem cell
26	chr5:93136400-93137200	Enhancers	HUES48 Cell Line	embryonic stem cell
27	chr5:93136400-93137200	Enhancers	iPS-18 Cell Line	embryonic stem cell
28	chr5:93136400-93137600	Enhancers	Stomach Mucosa	stomach
29	chr5:93136400-93137600	Enhancers	NHLF	lung
30	chr5:93136600-93137000	Enhancers	HUES64 Cell Line	embryonic stem cell
31	chr5:93136600-93137000	Enhancers	Brain Substantia Nigra	brain
32	chr5:93136600-93137000	Enhancers	NHDF-Ad	bronchial
33	chr5:93136600-93137200	Enhancers	iPS-20b Cell Line	embryonic stem cell
34	chr5:93136600-93137200	Enhancers	Primary hematopoietic stem cells	blood
35	chr5:93136600-93137200	Enhancers	Muscle Satellite Cultured Cells	--
36	chr5:93136600-93137200	Enhancers	Adipose Nuclei	Adipose
37	chr5:93136600-93137200	Enhancers	HSMM	muscle
38	chr5:93136600-93137200	Enhancers	NH-A	brain
39	chr5:93136600-93137600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
40	chr5:93136600-93137600	Enhancers	Brain Hippocampus Middle	brain
41	chr5:93136600-93137600	Enhancers	Fetal Lung	lung
42	chr5:93136800-93137000	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
43	chr5:93136800-93137000	Enhancers	HUES6 Cell Line	embryonic stem cell
44	chr5:93136800-93137000	Enhancers	Primary hematopoietic stem cells short term culture	blood
45	chr5:93136800-93137000	Enhancers	Primary T killer naive cells fromperipheralblood	blood
46	chr5:93136800-93137000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
47	chr5:93136800-93137000	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
48	chr5:93136800-93137000	Enhancers	Brain Anterior Caudate	brain
49	chr5:93136800-93137000	Enhancers	Brain Cingulate Gyrus	brain
50	chr5:93136800-93137000	Enhancers	Brain Inferior Temporal Lobe	brain

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