Variant report

Variant	rs56352670
Chromosome Location	chr17:17375773-17375774
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	STAT3	chr17:17375744-17375944	MCF10A-Er-Src	breast:	n/a	n/a
2	STAT3	chr17:17375747-17376146	MCF10A-Er-Src	breast:	n/a	chr17:17376031-17376040
3	STAT3	chr17:17375728-17376229	MCF10A-Er-Src	breast:	n/a	chr17:17376031-17376040
4	STAT3	chr17:17375734-17376146	MCF10A-Er-Src	breast:	n/a	chr17:17376031-17376040

Variant related genes	Relation type
MED9	TF binding region

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs56081808	1.00[AFR][1000 genomes]
rs7207127	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv482648	chr17:17315268-17455442	Flanking Bivalent TSS/Enh Genic enhancers Flanking Active TSS Weak transcription Active TSS Enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Strong transcription ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
2	nsv1065710	chr17:17328111-17391443	Enhancers Strong transcription Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
3	nsv907729	chr17:17338536-17425279	Enhancers Weak transcription Strong transcription Genic enhancers Active TSS Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
4	nsv907730	chr17:17358004-17415217	Strong transcription Genic enhancers Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
5	nsv907731	chr17:17358004-17504856	Flanking Bivalent TSS/Enh Flanking Active TSS Enhancers Weak transcription Active TSS Genic enhancers Strong transcription ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
6	nsv827909	chr17:17358945-17394331	Enhancers Weak transcription Strong transcription Active TSS ZNF genes & repeats Genic enhancers Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr17:17363600-17380000	Weak transcription	Right Atrium	heart
2	chr17:17363800-17380200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr17:17372000-17380200	Weak transcription	Brain Inferior Temporal Lobe	brain
4	chr17:17372800-17377600	Weak transcription	Adipose Nuclei	Adipose
5	chr17:17374400-17379400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
6	chr17:17374600-17375800	Weak transcription	Brain Germinal Matrix	brain
7	chr17:17374800-17380200	Weak transcription	Brain Substantia Nigra	brain
8	chr17:17375400-17376000	Enhancers	Cortex derived primary cultured neurospheres	brain
9	chr17:17375400-17376000	Enhancers	Fetal Brain Female	brain
10	chr17:17375400-17376000	Enhancers	Dnd41	blood
11	chr17:17375400-17376200	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
12	chr17:17375400-17376200	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
13	chr17:17375400-17376200	Enhancers	Brain Angular Gyrus	brain
14	chr17:17375400-17376200	Enhancers	Brain Cingulate Gyrus	brain
15	chr17:17375400-17376600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
16	chr17:17375400-17376600	Enhancers	Hela-S3	cervix
17	chr17:17375400-17376800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
18	chr17:17375600-17375800	Flanking Active TSS	Brain Hippocampus Middle	brain
19	chr17:17375600-17376000	Flanking Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
20	chr17:17375600-17376000	Enhancers	Fetal Brain Male	brain
21	chr17:17375600-17376000	Bivalent Enhancer	Osteobl	bone
22	chr17:17375600-17376200	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
23	chr17:17375600-17376600	Enhancers	Brain Anterior Caudate	brain

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