Variant report

Variant	rs563531330
Chromosome Location	chr15:77368301-77368302
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr15:77358882..77364790-chr15:77365543..77372289,11	K562	blood:
2	chr15:77358517..77361012-chr15:77366540..77368906,2	MCF-7	breast:
3	chr15:77366731..77368356-chr15:77373004..77374845,2	K562	blood:

Variant related genes	Relation type
ENSG00000140391	Chromatin interaction
ENSG00000269951	Chromatin interaction

Extended variants
information (count: 11 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:11 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3440794	chr15:76764595-77571114	Weak transcription Enhancers Strong transcription Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
2	esv3367577	chr15:77015618-77442634	Genic enhancers Weak transcription Strong transcription Enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
3	nsv1040852	chr15:77160237-78137541	Enhancers Flanking Active TSS Active TSS Strong transcription Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	42 gene(s)	inside rSNPs	diseases
4	esv2758388	chr15:77170550-77373448	Weak transcription Enhancers Flanking Active TSS Genic enhancers Strong transcription Bivalent Enhancer Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
5	esv2760041	chr15:77170550-77373448	Enhancers Genic enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
6	nsv833058	chr15:77235895-77393640	Enhancers Strong transcription Active TSS Weak transcription Flanking Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
7	nsv517068	chr15:77254544-77381222	Enhancers Weak transcription Genic enhancers Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
8	nsv904414	chr15:77304310-77400388	Weak transcription Enhancers Strong transcription Flanking Active TSS Genic enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
9	nsv1045376	chr15:77354671-77801487	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
10	nsv542443	chr15:77354671-77801487	Weak transcription Enhancers Genic enhancers Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
11	esv3332157	chr15:77368297-77371395	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:30 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:77363400-77370400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr15:77363600-77374200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr15:77363800-77369000	Weak transcription	Esophagus	oesophagus
4	chr15:77363800-77374400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
5	chr15:77364000-77368400	Weak transcription	Brain Anterior Caudate	brain
6	chr15:77364000-77368800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
7	chr15:77364000-77368800	Weak transcription	Duodenum Smooth Muscle	Duodenum
8	chr15:77364000-77370400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
9	chr15:77364000-77375800	Weak transcription	Right Atrium	heart
10	chr15:77367600-77369200	Enhancers	Breast Myoepithelial Primary Cells	Breast
11	chr15:77367800-77368400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
12	chr15:77367800-77368400	Bivalent Enhancer	Muscle Satellite Cultured Cells	--
13	chr15:77367800-77368400	Bivalent Enhancer	Osteobl	bone
14	chr15:77367800-77368800	Enhancers	Brain Substantia Nigra	brain
15	chr15:77367800-77369000	Enhancers	Brain Angular Gyrus	brain
16	chr15:77367800-77369000	Enhancers	Brain Cingulate Gyrus	brain
17	chr15:77367800-77369200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
18	chr15:77367800-77369200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
19	chr15:77367800-77369200	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
20	chr15:77367800-77369200	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
21	chr15:77367800-77369200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
22	chr15:77367800-77369200	Enhancers	Adipose Nuclei	Adipose
23	chr15:77367800-77369200	Enhancers	Brain Germinal Matrix	brain
24	chr15:77367800-77369200	Enhancers	Brain Inferior Temporal Lobe	brain
25	chr15:77367800-77369200	Enhancers	HSMMtube	muscle
26	chr15:77367800-77369400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
27	chr15:77367800-77369600	Enhancers	Cortex derived primary cultured neurospheres	brain
28	chr15:77368200-77368800	Enhancers	Brain Hippocampus Middle	brain
29	chr15:77368200-77369000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
30	chr15:77368200-77369200	Enhancers	HSMM	muscle

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