Variant report

Variant	rs563534105
Chromosome Location	chr15:52053499-52053500
allele	-/GG
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr15:52028181..52032954-chr15:52050508..52053619,6	MCF-7	breast:
2	chr15:52048901..52051193-chr15:52052461..52055031,2	MCF-7	breast:
3	chr15:52043943..52045698-chr15:52052374..52055124,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000259377	Chromatin interaction
ENSG00000140280	Chromatin interaction

Extended variants
information (count: 2 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv569409	chr15:52028914-52268144	Strong transcription Weak transcription Flanking Active TSS Enhancers Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	47 gene(s)	inside rSNPs	diseases
2	esv3411789	chr15:52052789-52087519	Weak transcription Enhancers Strong transcription Genic enhancers ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region	9 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:62 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:52044600-52060000	Weak transcription	Esophagus	oesophagus
2	chr15:52044600-52060200	Weak transcription	Aorta	Aorta
3	chr15:52044800-52060000	Weak transcription	Spleen	Spleen
4	chr15:52045000-52060200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
5	chr15:52046800-52060000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
6	chr15:52047200-52053600	Enhancers	Brain Cingulate Gyrus	brain
7	chr15:52047400-52053600	Enhancers	Brain Hippocampus Middle	brain
8	chr15:52048000-52058000	Weak transcription	Primary T cells from cord blood	blood
9	chr15:52048200-52060000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
10	chr15:52048200-52060200	Weak transcription	Thymus	Thymus
11	chr15:52049200-52060000	Weak transcription	Dnd41	blood
12	chr15:52049400-52059800	Weak transcription	Primary B cells from cord blood	blood
13	chr15:52049800-52059800	Weak transcription	Primary neutrophils fromperipheralblood	blood
14	chr15:52051200-52060000	Weak transcription	Fetal Muscle Trunk	muscle
15	chr15:52051200-52060000	Weak transcription	Lung	lung
16	chr15:52051200-52077600	Weak transcription	Psoas Muscle	Psoas
17	chr15:52051400-52053600	Enhancers	Brain Substantia Nigra	brain
18	chr15:52051400-52060000	Weak transcription	Fetal Brain Female	brain
19	chr15:52051400-52060200	Weak transcription	Adipose Nuclei	Adipose
20	chr15:52051400-52060400	Weak transcription	Stomach Smooth Muscle	stomach
21	chr15:52051400-52061200	Weak transcription	Skeletal Muscle Female	skeletal muscle
22	chr15:52051400-52068400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
23	chr15:52051400-52068400	Weak transcription	Stomach Mucosa	stomach
24	chr15:52052200-52056800	Weak transcription	Cortex derived primary cultured neurospheres	brain
25	chr15:52052200-52060000	Weak transcription	Left Ventricle	heart
26	chr15:52052200-52060000	Weak transcription	Ovary	ovary
27	chr15:52052200-52060200	Weak transcription	Right Ventricle	heart
28	chr15:52052200-52060800	Weak transcription	Colon Smooth Muscle	Colon
29	chr15:52052200-52061200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
30	chr15:52052200-52064200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
31	chr15:52052200-52068200	Weak transcription	Fetal Intestine Small	intestine
32	chr15:52052200-52068600	Weak transcription	HMEC	breast
33	chr15:52052200-52074600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
34	chr15:52052200-52076000	Weak transcription	Fetal Brain Male	brain
35	chr15:52052200-52101800	Weak transcription	Colonic Mucosa	Colon
36	chr15:52052400-52053600	Weak transcription	Right Atrium	heart
37	chr15:52052400-52060000	Weak transcription	Fetal Muscle Leg	muscle
38	chr15:52052400-52060200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
39	chr15:52052400-52060200	Weak transcription	Fetal Lung	lung
40	chr15:52052400-52060600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
41	chr15:52052400-52061000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
42	chr15:52052400-52067000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
43	chr15:52052400-52068200	Weak transcription	Fetal Intestine Large	intestine
44	chr15:52052400-52073200	Weak transcription	NHDF-Ad	bronchial
45	chr15:52052400-52078400	Weak transcription	Rectal Smooth Muscle	rectum
46	chr15:52052600-52056600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
47	chr15:52052600-52060000	Weak transcription	NHLF	lung
48	chr15:52052600-52060400	Weak transcription	Pancreatic Islets	Pancreatic Islet
49	chr15:52052600-52065200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
50	chr15:52052600-52106600	Weak transcription	HSMM	muscle

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