Variant report

Variant	rs563549714
Chromosome Location	chr15:75224606-75224607
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr15:75210535..75212443-chr15:75223416..75224933,2	MCF-7	breast:
2	chr15:75218179..75219714-chr15:75221927..75224825,2	K562	blood:
3	chr15:75199294..75201030-chr15:75224343..75226069,2	MCF-7	breast:
4	chr15:75184495..75186934-chr15:75223439..75225977,2	K562	blood:
5	chr15:75218199..75220881-chr15:75223418..75226005,3	MCF-7	breast:
6	chr15:75223447..75226028-chr15:75229839..75232204,2	MCF-7	breast:
7	chr15:75222363..75224645-chr15:75245506..75247062,2	K562	blood:

Variant related genes	Relation type
ENSG00000178761	Chromatin interaction
ENSG00000178741	Chromatin interaction

Extended variants
information (count: 2 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv904381	chr15:75108636-75242155	Weak transcription Genic enhancers Enhancers Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	55 gene(s)	inside rSNPs	diseases
2	esv2595466	chr15:75224476-75225972	Weak transcription Flanking Active TSS Enhancers Active TSS Strong transcription Genic enhancers	Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:75199600-75229400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
2	chr15:75202600-75224800	Strong transcription	Primary hematopoietic stem cells short term culture	blood
3	chr15:75202600-75225000	Strong transcription	Monocytes-CD14+_RO01746	blood
4	chr15:75204000-75224800	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
5	chr15:75204000-75224800	Strong transcription	Fetal Thymus	thymus
6	chr15:75204000-75228400	Strong transcription	HUES48 Cell Line	embryonic stem cell
7	chr15:75204600-75229200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
8	chr15:75207000-75225800	Strong transcription	Hela-S3	cervix
9	chr15:75207800-75227400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
10	chr15:75212400-75229600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
11	chr15:75212600-75229200	Weak transcription	Pancreatic Islets	Pancreatic Islet
12	chr15:75212800-75226000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
13	chr15:75213200-75227000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
14	chr15:75213200-75227000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
15	chr15:75213400-75225000	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
16	chr15:75213600-75227600	Weak transcription	Psoas Muscle	Psoas
17	chr15:75217400-75229400	Weak transcription	Placenta Amnion	Placenta Amnion
18	chr15:75219000-75225000	Strong transcription	K562	blood
19	chr15:75220200-75227400	Weak transcription	Right Ventricle	heart
20	chr15:75221400-75226000	Weak transcription	Brain Inferior Temporal Lobe	brain
21	chr15:75221400-75226000	Weak transcription	Colon Smooth Muscle	Colon
22	chr15:75221400-75229800	Weak transcription	Spleen	Spleen
23	chr15:75221600-75225800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
24	chr15:75221600-75226000	Weak transcription	Primary T cells from cord blood	blood
25	chr15:75221600-75226000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
26	chr15:75221600-75226200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
27	chr15:75221600-75226200	Weak transcription	Small Intestine	intestine
28	chr15:75221600-75227200	Weak transcription	Brain Anterior Caudate	brain
29	chr15:75221600-75227400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
30	chr15:75221600-75227400	Weak transcription	Brain Angular Gyrus	brain
31	chr15:75221600-75228000	Weak transcription	Fetal Brain Male	brain
32	chr15:75221600-75228600	Weak transcription	Stomach Smooth Muscle	stomach
33	chr15:75221600-75229200	Weak transcription	Fetal Kidney	kidney
34	chr15:75221600-75229200	Weak transcription	HSMMtube	muscle
35	chr15:75221600-75229400	Weak transcription	Aorta	Aorta
36	chr15:75221600-75229400	Weak transcription	Ovary	ovary
37	chr15:75221600-75229600	Weak transcription	Gastric	stomach
38	chr15:75221800-75226000	Weak transcription	Skeletal Muscle Female	skeletal muscle
39	chr15:75221800-75228600	Weak transcription	Cortex derived primary cultured neurospheres	brain
40	chr15:75221800-75228800	Weak transcription	Fetal Brain Female	brain
41	chr15:75222000-75225800	Weak transcription	Skeletal Muscle Male	skeletal muscle
42	chr15:75222000-75227000	Weak transcription	Duodenum Smooth Muscle	Duodenum
43	chr15:75222000-75228200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
44	chr15:75222000-75228600	Weak transcription	Muscle Satellite Cultured Cells	--
45	chr15:75222000-75228800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
46	chr15:75222000-75228800	Weak transcription	Primary neutrophils fromperipheralblood	blood
47	chr15:75222000-75229200	Weak transcription	NHDF-Ad	bronchial
48	chr15:75222200-75225000	Weak transcription	Left Ventricle	heart
49	chr15:75222200-75226000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
50	chr15:75222200-75227000	Weak transcription	Colonic Mucosa	Colon

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