Variant report

Variant	rs563556479
Chromosome Location	chr2:189734552-189734553
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:189733529..189735881-chr2:189735905..189738655,2	MCF-7	breast:

Extended variants
information (count: 7 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1003974	chr2:189331760-189827814	Enhancers Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
2	nsv1008847	chr2:189603961-189769705	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv997454	chr2:189615728-189770133	Enhancers Active TSS Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	nsv1002175	chr2:189615728-189776301	Weak transcription ZNF genes & repeats Enhancers Flanking Active TSS Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
5	nsv834490	chr2:189703550-189840963	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
6	esv4236	chr2:189730546-189740139	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
7	nsv821858	chr2:189733808-189740029	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:189733800-189734600	Enhancers	Aorta	Aorta
2	chr2:189733800-189735000	Enhancers	Fetal Stomach	stomach
3	chr2:189733800-189735200	Enhancers	Fetal Lung	lung
4	chr2:189733800-189735400	Enhancers	NHDF-Ad	bronchial
5	chr2:189733800-189735600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
6	chr2:189733800-189735800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
7	chr2:189734000-189734600	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
8	chr2:189734000-189735200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
9	chr2:189734000-189735200	Enhancers	Stomach Smooth Muscle	stomach
10	chr2:189734000-189735200	Enhancers	NHLF	lung
11	chr2:189734000-189735600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
12	chr2:189734000-189735600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
13	chr2:189734000-189735600	Enhancers	Osteobl	bone
14	chr2:189734200-189734600	Enhancers	Adipose Nuclei	Adipose
15	chr2:189734200-189734600	Enhancers	Fetal Heart	heart
16	chr2:189734200-189734600	Enhancers	Fetal Muscle Leg	muscle
17	chr2:189734200-189734800	Enhancers	Ovary	ovary
18	chr2:189734200-189734800	Enhancers	HSMM	muscle
19	chr2:189734200-189735200	Enhancers	Placenta Amnion	Placenta Amnion
20	chr2:189734200-189735200	Enhancers	NH-A	brain
21	chr2:189734400-189735200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
22	chr2:189734400-189735200	Enhancers	Rectal Smooth Muscle	rectum
23	chr2:189734400-189735400	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
24	chr2:189734400-189735600	Enhancers	Muscle Satellite Cultured Cells	--

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links