Variant report

Variant	rs56355821
Chromosome Location	chr5:113589648-113589649
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs58315203	1.00[AMR][1000 genomes]
rs73779730	1.00[AMR][1000 genomes]
rs73779744	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv882727	chr5:113548400-113602162	Weak transcription Enhancers Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	nsv1029021	chr5:113551892-113599644	Enhancers Weak transcription Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
3	nsv537865	chr5:113551892-113599644	Enhancers Weak transcription Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:113586600-113590800	Weak transcription	Fetal Stomach	stomach
2	chr5:113587000-113590600	Weak transcription	Fetal Heart	heart
3	chr5:113588200-113591400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
4	chr5:113588400-113589800	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
5	chr5:113588600-113595800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
6	chr5:113589200-113590800	Weak transcription	HUES48 Cell Line	embryonic stem cell
7	chr5:113589400-113591000	Weak transcription	H1 Cell Line	embryonic stem cell
8	chr5:113589600-113590800	Weak transcription	HUES6 Cell Line	embryonic stem cell
9	chr5:113589600-113591000	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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