Variant report

Variant	rs563561572
Chromosome Location	chr11:34640373-34640374
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	CUX1	chr11:34639837-34640961	K562	blood:	n/a	n/a
2	CEBPD	chr11:34639903-34640980	K562	blood:	n/a	n/a

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:34639668..34642067-chr11:34645120..34646701,2	K562	blood:
2	chr11:34637828..34640376-chr11:34674188..34675830,2	K562	blood:

Variant related genes	Relation type
EHF	TF binding region
ENSG00000135373	Chromatin interaction

Extended variants
information (count: 2 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832116	chr11:34539536-34673900	Flanking Active TSS Enhancers Active TSS Weak transcription Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv832117	chr11:34639008-34831199	Enhancers Flanking Active TSS Active TSS Weak transcription Strong transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:34608400-34643600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr11:34625400-34642800	Weak transcription	Gastric	stomach
3	chr11:34634000-34643200	Weak transcription	Lung	lung
4	chr11:34635000-34643400	Weak transcription	Brain Cingulate Gyrus	brain
5	chr11:34635200-34642000	Weak transcription	Esophagus	oesophagus
6	chr11:34636200-34641000	Weak transcription	Fetal Intestine Small	intestine
7	chr11:34636200-34644000	Enhancers	K562	blood
8	chr11:34636400-34641800	Weak transcription	Fetal Intestine Large	intestine
9	chr11:34636600-34640800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
10	chr11:34636600-34641400	Weak transcription	Rectal Mucosa Donor 31	rectum
11	chr11:34636800-34640800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
12	chr11:34637200-34641600	Weak transcription	Primary B cells from peripheral blood	blood
13	chr11:34637400-34641000	Weak transcription	Primary monocytes fromperipheralblood	blood
14	chr11:34637400-34641200	Weak transcription	Monocytes-CD14+_RO01746	blood
15	chr11:34637600-34640400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
16	chr11:34637800-34642000	Enhancers	Stomach Mucosa	stomach
17	chr11:34637800-34649200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
18	chr11:34639000-34641200	Enhancers	Fetal Heart	heart
19	chr11:34639000-34641400	Weak transcription	NHEK	skin
20	chr11:34639000-34641600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
21	chr11:34639800-34641000	Weak transcription	Duodenum Mucosa	Duodenum
22	chr11:34639800-34653800	Weak transcription	Right Atrium	heart
23	chr11:34640000-34640400	Weak transcription	Pancreas	Pancrea
24	chr11:34640000-34643200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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