Variant report

Variant	rs563574946
Chromosome Location	chr17:20799958-20799959
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr17:20798809-20800181	H1-hESC	embryonic stem cell:	n/a	n/a
2	POLR2A	chr17:20799911-20800131	K562	blood:	n/a	n/a
3	POLR2A	chr17:20799930-20799980	K562	blood:	n/a	n/a
4	POLR2A	chr17:20799288-20799983	H1-hESC	embryonic stem cell:	n/a	n/a

Variant related genes	Relation type
CCDC144NL	TF binding region
RNU6-1178P	TF binding region

Extended variants
information (count: 5 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv916440	chr17:20171468-20839266	ZNF genes & repeats Weak transcription Strong transcription Genic enhancers Enhancers Active TSS Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	63 gene(s)	inside rSNPs	diseases
2	esv2751619	chr17:20462908-20914156	Enhancers Weak transcription Bivalent/Poised TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	44 gene(s)	inside rSNPs	diseases
3	esv3361931	chr17:20539962-20845258	Active TSS Enhancers Weak transcription Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
4	esv3330516	chr17:20572433-20862663	Enhancers Bivalent/Poised TSS Genic enhancers Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
5	nsv960440	chr17:20799926-20803206	Weak transcription Strong transcription Enhancers Active TSS Genic enhancers Flanking Active TSS Bivalent Enhancer	TF binding region CpG island lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr17:20780800-20801600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr17:20782600-20801200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
3	chr17:20789400-20801800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
4	chr17:20798200-20801200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
5	chr17:20798200-20811600	Weak transcription	H9 Cell Line	embryonic stem cell
6	chr17:20798600-20801200	Weak transcription	HUES6 Cell Line	embryonic stem cell
7	chr17:20798800-20800200	Strong transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
8	chr17:20798800-20806800	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
9	chr17:20799000-20800000	Strong transcription	H1 Cell Line	embryonic stem cell
10	chr17:20799200-20800000	Active TSS	Fetal Brain Female	brain
11	chr17:20799200-20800200	Strong transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
12	chr17:20799400-20800000	Active TSS	Muscle Satellite Cultured Cells	--
13	chr17:20799600-20800000	Bivalent Enhancer	Foreskin Fibroblast Primary Cells skin01	Skin
14	chr17:20799600-20800000	Active TSS	Pancreas	Pancrea
15	chr17:20799600-20800200	Genic enhancers	ES-UCSF4 Cell Line	embryonic stem cell
16	chr17:20799800-20800000	Enhancers	Primary T helper naive cells fromperipheralblood	blood
17	chr17:20799800-20800000	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
18	chr17:20799800-20800200	Strong transcription	iPS DF 19.11 Cell Line	embryonic stem cell
19	chr17:20799800-20801600	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
20	chr17:20799800-20803400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell

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