The 2.0 version of rSNPBase

Variant report

Variant rs563582255
Chromosome Location chr3:159493671-159493672
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:71 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr3:159484000-159494600 Weak transcription Psoas Muscle Psoas
2 chr3:159484200-159501200 Weak transcription Placenta Amnion Placenta Amnion
3 chr3:159484400-159505400 Weak transcription ES-UCSF4 Cell Line embryonic stem cell
4 chr3:159484600-159500400 Weak transcription Fetal Intestine Small intestine
5 chr3:159486800-159494000 Weak transcription Fetal Heart heart
6 chr3:159488400-159494600 Weak transcription Spleen Spleen
7 chr3:159490200-159501400 Weak transcription Aorta Aorta
8 chr3:159491000-159495200 Enhancers Brain Cingulate Gyrus brain
9 chr3:159491000-159495200 Enhancers Colon Smooth Muscle Colon
10 chr3:159491000-159495200 Enhancers Rectal Smooth Muscle rectum
11 chr3:159491000-159495200 Enhancers HUVEC blood vessel
12 chr3:159492200-159495000 Enhancers Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
13 chr3:159492400-159493800 Enhancers Brain Dorsolateral Prefrontal Cortex brain
14 chr3:159492400-159495200 Enhancers Brain Inferior Temporal Lobe brain
15 chr3:159492600-159493800 Enhancers A549 lung
16 chr3:159492600-159494400 Enhancers iPS-18 Cell Line embryonic stem cell
17 chr3:159492600-159495000 Enhancers Osteobl bone
18 chr3:159492800-159494600 Enhancers Foreskin Fibroblast Primary Cells skin02 Skin
19 chr3:159492800-159494800 Enhancers HUES48 Cell Line embryonic stem cell
20 chr3:159492800-159494800 Enhancers Ganglion Eminence derived primary cultured neurospheres brain
21 chr3:159492800-159494800 Enhancers NHDF-Ad bronchial
22 chr3:159492800-159495200 Enhancers HSMM muscle
23 chr3:159493000-159493800 Enhancers Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
24 chr3:159493000-159493800 Flanking Active TSS Brain Anterior Caudate brain
25 chr3:159493000-159493800 Enhancers HMEC breast
26 chr3:159493000-159493800 Enhancers NHEK skin
27 chr3:159493000-159494000 Enhancers Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
28 chr3:159493000-159494000 Enhancers Primary hematopoietic stem cells G-CSF-mobilized Male --
29 chr3:159493000-159494000 Genic enhancers Foreskin Keratinocyte Primary Cells skin02 Skin
30 chr3:159493000-159494000 Enhancers Fetal Kidney kidney
31 chr3:159493000-159494200 Enhancers Hela-S3 cervix
32 chr3:159493000-159494800 Enhancers Cortex derived primary cultured neurospheres brain
33 chr3:159493000-159494800 Enhancers Duodenum Smooth Muscle Duodenum
34 chr3:159493000-159494800 Enhancers Skeletal Muscle Male skeletal muscle
35 chr3:159493000-159494800 Enhancers NH-A brain
36 chr3:159493000-159495000 Enhancers Left Ventricle heart
37 chr3:159493000-159495200 Enhancers Muscle Satellite Cultured Cells --
38 chr3:159493000-159495200 Enhancers Adipose Nuclei Adipose
39 chr3:159493200-159493800 Enhancers hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
40 chr3:159493200-159494200 Enhancers hESC Derived CD184+ Endoderm Cultured Cells ES cell derived
41 chr3:159493200-159494800 Enhancers Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
42 chr3:159493400-159494000 Enhancers H9 Derived Neuronal Progenitor Cultured Cells ES cell derived
43 chr3:159493400-159494200 Flanking Active TSS Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
44 chr3:159493400-159494600 Weak transcription Pancreas Pancrea
45 chr3:159493400-159494600 Weak transcription Skeletal Muscle Female skeletal muscle
46 chr3:159493400-159495200 Enhancers Brain Substantia Nigra brain
47 chr3:159493400-159495200 Enhancers HSMMtube muscle
48 chr3:159493400-159500600 Weak transcription Gastric stomach
49 chr3:159493600-159493800 Enhancers iPS-15b Cell Line embryonic stem cell
50 chr3:159493600-159493800 Flanking Active TSS iPS-20b Cell Line embryonic stem cell

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Last update: Aug 31, 2015