Variant report

Variant	rs563589716
Chromosome Location	chr7:137090405-137090406
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:137083432..137086425-chr7:137089832..137091698,2	MCF-7	breast:

Extended variants
information (count: 5 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1029192	chr7:136433278-137147566	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
2	nsv869820	chr7:136990386-137347718	Weak transcription Flanking Active TSS Strong transcription Enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
3	nsv1027868	chr7:137004690-137311653	Enhancers Flanking Active TSS Strong transcription Active TSS Weak transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
4	nsv539134	chr7:137004690-137311653	Weak transcription Active TSS Enhancers Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
5	nsv518230	chr7:137089537-137090469	Weak transcription Enhancers Strong transcription Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:137073800-137095600	Weak transcription	HSMMtube	muscle
2	chr7:137080600-137106000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
3	chr7:137085200-137102400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
4	chr7:137085400-137091600	Weak transcription	HSMM	muscle
5	chr7:137086000-137102200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
6	chr7:137086000-137102400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
7	chr7:137088200-137092400	Weak transcription	Brain Germinal Matrix	brain
8	chr7:137088200-137093800	Enhancers	Cortex derived primary cultured neurospheres	brain
9	chr7:137088400-137092000	Weak transcription	Brain Inferior Temporal Lobe	brain
10	chr7:137088400-137092400	Weak transcription	Brain Angular Gyrus	brain
11	chr7:137088400-137094600	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
12	chr7:137088800-137091600	Weak transcription	Brain Substantia Nigra	brain
13	chr7:137088800-137092600	Weak transcription	Brain Cingulate Gyrus	brain
14	chr7:137089200-137091000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
15	chr7:137089800-137092200	Weak transcription	Brain Hippocampus Middle	brain
16	chr7:137089800-137092800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
17	chr7:137089800-137092800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
18	chr7:137090000-137091000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
19	chr7:137090000-137091400	Strong transcription	Aorta	Aorta
20	chr7:137090000-137091600	Strong transcription	Muscle Satellite Cultured Cells	--
21	chr7:137090200-137091000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
22	chr7:137090200-137093000	Weak transcription	Osteobl	bone
23	chr7:137090400-137092000	Weak transcription	Brain Anterior Caudate	brain

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