Variant report

Variant	rs56359943
Chromosome Location	chr15:92393489-92393490
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	NFYB	chr15:92393433-92393805	GM12878	blood:	n/a	n/a
2	NFYB	chr15:92393375-92393715	K562	blood:	n/a	n/a
3	CTCF	chr15:92392467-92393496	A549	lung:	n/a	chr15:92393083-92393104 chr15:92392991-92392999 chr15:92393086-92393094 chr15:92393081-92393099

No.	Distal block	Cell Line	Cell type
1	chr15:92392604..92393548-chr15:92620316..92621247,3	MCF-7	breast:
2	chr15:92389343..92391960-chr15:92391997..92394160,2	K562	blood:
3	chr15:92392988..92393519-chr15:92621100..92621897,2	MCF-7	breast:

Variant related genes	Relation type
SLCO3A1	TF binding region

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs11852976	1.00[ASN][1000 genomes]
rs11858157	1.00[ASN][1000 genomes]
rs28399101	1.00[ASN][1000 genomes]
rs28504271	1.00[ASN][1000 genomes]
rs28517863	1.00[ASN][1000 genomes]
rs28534923	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1048635	chr15:92073294-92557339	Weak transcription Genic enhancers Flanking Active TSS Enhancers Strong transcription Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
2	nsv870094	chr15:92367354-92631647	Flanking Active TSS Weak transcription Enhancers Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:42 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:92389000-92394800	Weak transcription	Brain Angular Gyrus	brain
2	chr15:92389200-92394800	Weak transcription	Ovary	ovary
3	chr15:92389800-92394600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
4	chr15:92389800-92394800	Weak transcription	Right Ventricle	heart
5	chr15:92391200-92394400	Weak transcription	Brain Cingulate Gyrus	brain
6	chr15:92391200-92394800	Weak transcription	Brain Inferior Temporal Lobe	brain
7	chr15:92391800-92395400	Enhancers	Primary hematopoietic stem cells short term culture	blood
8	chr15:92392400-92394000	Enhancers	Primary T helper naive cells from peripheral blood	blood
9	chr15:92392400-92394000	Enhancers	Primary T helper naive cells fromperipheralblood	blood
10	chr15:92392400-92394000	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
11	chr15:92392400-92395600	Enhancers	Primary T helper cells fromperipheralblood	blood
12	chr15:92392600-92393800	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
13	chr15:92392600-92394200	Enhancers	Primary T cells from cord blood	blood
14	chr15:92392600-92395000	Enhancers	Monocytes-CD14+_RO01746	blood
15	chr15:92392600-92395600	Enhancers	Primary T helper cells PMA-I stimulated	--
16	chr15:92392600-92395800	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
17	chr15:92392800-92394000	Weak transcription	Duodenum Mucosa	Duodenum
18	chr15:92392800-92394800	Weak transcription	Adipose Nuclei	Adipose
19	chr15:92392800-92395200	Enhancers	Primary neutrophils fromperipheralblood	blood
20	chr15:92392800-92395400	Enhancers	Primary monocytes fromperipheralblood	blood
21	chr15:92392800-92395400	Enhancers	Primary T regulatory cells fromperipheralblood	blood
22	chr15:92393000-92393800	Weak transcription	Brain Anterior Caudate	brain
23	chr15:92393000-92394000	Enhancers	Primary T cells fromperipheralblood	blood
24	chr15:92393000-92394200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
25	chr15:92393000-92394800	Weak transcription	Fetal Heart	heart
26	chr15:92393000-92395000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
27	chr15:92393000-92395200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
28	chr15:92393000-92395400	Enhancers	Primary hematopoietic stem cells	blood
29	chr15:92393000-92395400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
30	chr15:92393000-92395400	Enhancers	Brain Hippocampus Middle	brain
31	chr15:92393000-92395600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
32	chr15:92393000-92395800	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
33	chr15:92393200-92394800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
34	chr15:92393200-92395000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
35	chr15:92393400-92394000	Weak transcription	Brain Substantia Nigra	brain
36	chr15:92393400-92394400	Enhancers	Primary T killer memory cells from peripheral blood	blood
37	chr15:92393400-92394400	Weak transcription	Left Ventricle	heart
38	chr15:92393400-92394800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
39	chr15:92393400-92395000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
40	chr15:92393400-92395000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
41	chr15:92393400-92395000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
42	chr15:92393400-92395000	Weak transcription	Right Atrium	heart

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links