Variant report

Variant rs56360517
Chromosome Location chr5:115830786-115830787
allele C/G
Outlinks Ensembl   UCSC
Chromatin state (count:80 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr5:115791600-115838000 Weak transcription Right Ventricle heart
2 chr5:115796000-115833400 Strong transcription HUES64 Cell Line embryonic stem cell
3 chr5:115797000-115834800 Strong transcription H1 Cell Line embryonic stem cell
4 chr5:115797000-115838400 Strong transcription Placenta Placenta
5 chr5:115797400-115833800 Strong transcription iPS-18 Cell Line embryonic stem cell
6 chr5:115797600-115834600 Strong transcription H9 Cell Line embryonic stem cell
7 chr5:115797800-115834800 Strong transcription ES-UCSF4 Cell Line embryonic stem cell
8 chr5:115798000-115833200 Strong transcription HUES48 Cell Line embryonic stem cell
9 chr5:115798000-115834600 Strong transcription iPS-20b Cell Line embryonic stem cell
10 chr5:115799400-115832000 Strong transcription Fetal Muscle Trunk muscle
11 chr5:115803400-115833200 Strong transcription iPS-15b Cell Line embryonic stem cell
12 chr5:115813600-115831800 Strong transcription Fetal Stomach stomach
13 chr5:115813600-115832000 Strong transcription Fetal Adrenal Gland Adrenal Gland
14 chr5:115813800-115833600 Strong transcription hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
15 chr5:115813800-115851000 Weak transcription Liver Liver
16 chr5:115814000-115850200 Weak transcription Small Intestine intestine
17 chr5:115816000-115838400 Weak transcription Spleen Spleen
18 chr5:115816800-115840000 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
19 chr5:115818600-115833200 Weak transcription Fetal Brain Male brain
20 chr5:115820000-115832600 Strong transcription Cortex derived primary cultured neurospheres brain
21 chr5:115821400-115833400 Strong transcription Rectal Mucosa Donor 29 rectum
22 chr5:115822600-115832200 Genic enhancers Foreskin Melanocyte Primary Cells skin03 Skin
23 chr5:115823000-115842600 Weak transcription Pancreatic Islets Pancreatic Islet
24 chr5:115823200-115832000 Strong transcription Rectal Mucosa Donor 31 rectum
25 chr5:115824000-115833600 Weak transcription Ovary ovary
26 chr5:115825600-115833200 Strong transcription ES-I3 Cell Line embryonic stem cell
27 chr5:115827600-115832200 Strong transcription Fetal Muscle Leg muscle
28 chr5:115828000-115831800 Strong transcription Fetal Brain Female brain
29 chr5:115828200-115865400 Weak transcription Primary T cells from cord blood blood
30 chr5:115828600-115831800 Genic enhancers H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
31 chr5:115828600-115833600 Strong transcription ES-WA7 Cell Line embryonic stem cell
32 chr5:115828800-115831200 Weak transcription HSMMtube muscle
33 chr5:115828800-115833400 Weak transcription Aorta Aorta
34 chr5:115828800-115833600 Weak transcription Brain Inferior Temporal Lobe brain
35 chr5:115828800-115837800 Weak transcription Breast Myoepithelial Primary Cells Breast
36 chr5:115828800-115838000 Weak transcription Psoas Muscle Psoas
37 chr5:115829000-115831000 Strong transcription Ganglion Eminence derived primary cultured neurospheres brain
38 chr5:115829000-115831400 Weak transcription Skeletal Muscle Male skeletal muscle
39 chr5:115829000-115833000 Weak transcription Brain Substantia Nigra brain
40 chr5:115829000-115837800 Weak transcription Skeletal Muscle Female skeletal muscle
41 chr5:115829400-115831200 Strong transcription Brain Germinal Matrix brain
42 chr5:115829600-115831800 Strong transcription iPS DF 19.11 Cell Line embryonic stem cell
43 chr5:115829600-115831800 Strong transcription Duodenum Smooth Muscle Duodenum
44 chr5:115829600-115831800 Strong transcription Sigmoid Colon Sigmoid Colon
45 chr5:115829600-115832200 Strong transcription Fetal Intestine Large intestine
46 chr5:115829600-115832200 Weak transcription HMEC breast
47 chr5:115829800-115831800 Strong transcription Fetal Intestine Small intestine
48 chr5:115829800-115831800 Strong transcription Stomach Smooth Muscle stomach
49 chr5:115830000-115831000 Enhancers Dnd41 blood
50 chr5:115830000-115831200 Strong transcription Brain Cingulate Gyrus brain

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