Variant report

Variant	rs563605999
Chromosome Location	chr10:25671061-25671062
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 5 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2761583	chr10:25525657-25722444	Weak transcription Enhancers ZNF genes & repeats Active TSS Strong transcription Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	esv3349863	chr10:25614571-25946379	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	esv3342880	chr10:25644995-25682820	Weak transcription Enhancers ZNF genes & repeats Strong transcription Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
4	nsv550225	chr10:25653017-25671382	Flanking Active TSS Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
5	nsv550226	chr10:25653017-25693426	ZNF genes & repeats Enhancers Strong transcription Weak transcription Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:25670000-25673200	Enhancers	Cortex derived primary cultured neurospheres	brain
2	chr10:25670200-25673400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
3	chr10:25670800-25671200	Enhancers	ES-I3 Cell Line	embryonic stem cell
4	chr10:25670800-25671200	Flanking Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
5	chr10:25670800-25671200	Enhancers	Brain Cingulate Gyrus	brain
6	chr10:25670800-25671400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
7	chr10:25670800-25671600	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
8	chr10:25670800-25672600	Enhancers	iPS-18 Cell Line	embryonic stem cell
9	chr10:25671000-25671200	Enhancers	HUES48 Cell Line	embryonic stem cell
10	chr10:25671000-25671200	Enhancers	HUES64 Cell Line	embryonic stem cell
11	chr10:25671000-25671200	Enhancers	iPS-15b Cell Line	embryonic stem cell
12	chr10:25671000-25671200	Enhancers	Brain Anterior Caudate	brain
13	chr10:25671000-25671200	Enhancers	Brain Inferior Temporal Lobe	brain
14	chr10:25671000-25671400	Enhancers	H1 Cell Line	embryonic stem cell
15	chr10:25671000-25677000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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